Mitochondrial barcodes of dragonflies and damselflies originated from Taman Negara Endau Rompin, Johor, Malaysia

Dragonflies and damselflies (Odonates) are important biological indicators in freshwater ecosystems. However, identification among Odonates is often challenging due to their similar morphological features. Therefore, the incorporation of morphological identification by taxonomists and validation using mitochondrial barcodes such as cytochrome c oxidase subunit I (COI) can be a more reliable approach to enhance the accuracy in species identification. In this study, four COI barcodes for Malaysian dragonflies (Neurothemis fluctuans) and damselflies (Neurobasis chinensis, Aristocypha fenestrella and Sundacypha petiolata) were generated. Three of the generated barcodes (D2 COI, D4 COI and D5 COI) supported the species identified by taxonomists meanwhile D3 COI deduced that the damselfly species was misidentified due to the very similar morphology between the same genus of damselfly. All of the COI barcodes are now available in the GenBank with the accession numbers of MT266926.1 (D2 COI), MT266925.1 (D3 COI), MT269676.1 (D4 COI) and MT266924.1 (D5 COI)

Mitochondrial barcodes of three malaysian butterflies originating from Taman Negara Endau Rompin Johor, Malaysia

Butterflies are projected as reliable and economical biodiversity indicator. Traditionally, taxonomists identified and classified butterfly species based on highly similar and ambiguous morphological appearances which can result in problematic species identification process leading to misidentification of species. DNA barcoding has been developed for taxonomic identification of butterflies to species level. Nonetheless, this approach is hampered by the paucity of reference barcodes encompassing butterflies of all families and species in Malaysia. This study reported four novel DNA barcodes (two cytochrome oxidase subunit I (COI) and two cytochrome b, cytb) of Malaysian butterflies generated using Sanger sequencing. One barcode (DIB032 COI) supported the species identified by taxonomists whereas the other three barcodes (DIB034 COI, DIB034 cytb and DIB046/049 cytb) deduced that the butterfly species were either misidentified or unidentified up to species level due to the lack of reference barcodes in GenBank. The four novel DNA barcodes were deposited in GenBank under the accession number MT210226.1 (DIB032 COI), MT210227.1 (DIB034 COI), MT210228.1 (DIB034 cytb) and MT210229.1 (DIB046/049 cytb)

Mitochondrial barcodes of dragonflies and damselflies originated from Taman Negara Endau Rompin, Johor, Malaysia

Dragonflies and damselflies (Odonates) are important biological indicators in freshwater ecosystems. However, identification among Odonates is often challenging due to their similar morphological features. Therefore, the incorporation of morphological identification by taxonomists and validation using mitochondrial barcodes such as cytochrome c oxidase subunit I (COI) can be a more reliable approach to enhance the accuracy in species identification. In this study, four COI barcodes for Malaysian dragonflies (Neurothemis fluctuans) and damselflies (Neurobasis chinensis, Aristocypha fenestrella and Sundacypha petiolata) were generated. Three of the generated barcodes (D2 COI, D4 COI and D5 COI) supported the species identified by taxonomists meanwhile D3 COI deduced that the damselfly species was misidentified due to the very similar morphology between the same genus of damselfly. All of the COI barcodes are now available in the GenBank with the accession numbers of MT266926.1 (D2 COI), MT266925.1 (D3 COI), MT269676.1 (D4 COI) and MT266924.1 (D5 COI)

Robertkochia solimangrovi sp. Nov., isolated from mangrove soil,and emended description of the genus robertkochia

To date, there is sparse information for the genus Robertkochia with Robertkochia marina CC-AMO-30DT as the only described member. We report here a new species isolated from mangrove soil collected at Malaysia Tanjung Piai National Park and perform polyphasic characterization to determine its taxonomic position. Strain CL23T is a Gram-negative, yellow-pigmented, strictly aerobic, catalase-positive and oxidase-positive bacterium. The optimal growth conditions were determined to be at pH 7.0, 30–37 °C and in 1–2 % (w/v) NaCl. The major respiratory quinone was menaquinone-6 (MK-6) and the highly abundant polar lipids were four unidentified lipids, a phosphatidylethanolamine and two unidentified aminolipids. The 16S rRNA gene similarity between strain CL23T and R. marina CC-AMO-30DT is 96.67 %. Strain CL23T and R. marina CC-AMO-30DT clustered together and were distinguished from taxa of closely related genera in 16S rRNA gene phylogenetic analysis. Genome sequencing revealed that strain CL23T has a genome size of 4.4 Mbp and a G+C content of 40.72 mol%. Overall genome related indexes including digital DNA–DNA hybridization value and average nucleotide identity are 17.70 % and approximately 70%, below the cutoffs of 70 and 95%, respectively, indicated that strain CL23T is a distinct species from R. marina CC-AMO-30DT. Collectively, based on the phenotypic, chemotaxonomic, phylogenetic and genomic evidences presented here, strain CL23T is proposed to represent a new species with the name Robertkochia solimangrovi sp. nov. (KCTC 72252T=LMG 31418T). An emended description of the genus Robertkochia is also proposed