Creating chimeras: Embryonic stem cells incorporated

Gene modification within the murine genome has become a powerful and invaluable tool to investigate development. One example of the utility of such technology is providing a method by which researchers can follow cells throughout development via the introduced genetic modifications.Fil: Pascottini, Osvaldo Bogado. University of Chicago; Estados UnidosFil: Goszczynski, Daniel Estanislao. University of Chicago; Estados Unidos. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Nguyen, Alexandra L.. University of Chicago; Estados Unido

Cross-domain self organizing maps

Thesis (M. Eng.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2006.Includes bibliographical references (leaves 59-60).In this thesis, I present a method for organizing and relating events represented in two domains: the transition-space domain, which focuses on change and the trajectory-space domain, which focuses on movement along paths. Particular events are described in both domains, and each description is fed into a self organizing map. After these self organizing maps have been trained with enough events, the maps are clustered independently. Then, after the two self organizing maps are clustered, the clusters in the two maps are themselves clustered, creating links between trajectory descriptions and the transition descriptions. Thus, I provide a method for relating events seen in multiple perspectives. After training with 1914 different sentences about motion, my implemented system noted that particular motions along a path are highly correlated with particular transitions. For example, "the bird flew to the top of a tree" is part of a trajectory cluster that is highly correlated with a transition cluster in which a motion appears and a distance first decreases and finally disappears.by Estanislao L. Fidelholtz.M.Eng

Cosmic Ray Interactions in Shielding Materials

This document provides a detailed study of materials used to shield against the hadronic particles from cosmic ray showers at Earth’s surface. This work was motivated by the need for a shield that minimizes activation of the enriched germanium during transport for the MAJORANA collaboration. The materials suitable for cosmic-ray shield design are materials such as lead and iron that will stop the primary protons, and materials like polyethylene, borated polyethylene, concrete and water that will stop the induced neutrons. The interaction of the different cosmic-ray components at ground level (protons, neutrons, muons) with their wide energy range (from kilo-electron volts to giga-electron volts) is a complex calculation. Monte Carlo calculations have proven to be a suitable tool for the simulation of nucleon transport, including hadron interactions and radioactive isotope production. The industry standard Monte Carlo simulation tool, Geant4, was used for this study. The result of this study is the assertion that activation at Earth’s surface is a result of the neutronic and protonic components of the cosmic-ray shower. The best material to shield against these cosmic-ray components is iron, which has the best combination of primary shielding and minimal secondary neutron production

Development of a Portable Muon Witness System

Since understanding and quantifying cosmic ray induced radioactive backgrounds in copper and germanium are important to the MAJORANA DEMONSTRATOR, methods are needed for monitoring the levels of such backgrounds produced in materials being transported and processed for the experiment. This report focuses on work conducted at Pacific Northwest National Laboratory to develop a muon witness system as a one way of monitoring induced activities. The operational goal of this apparatus is to characterize cosmic ray exposure of materials. The cosmic ray flux at the Earth’s surface is composed of several types of particles, including neutrons, muons, gamma rays and protons. These particles induce nuclear reactions, generating isotopes that contribute to the radiological background. Underground, the main mechanism of activation is by muon produced spallation neutrons since the hadron component of cosmic rays is removed at depths greater than a few tens of meters. This is a sub-dominant contributor above ground, but muons become predominant in underground experiments. For low-background experiments cosmogenic production of certain isotopes, such as 68Ge and 60Co, must be accounted for in the background budgets. Muons act as minimum ionizing particles, depositing a fixed amount of energy per unit length in a material, and have a very high penetrating power. Using muon flux measurements as a “witness” for the hadron flux, the cosmogenic induced activity can be quantified by correlating the measured muon flux and known hadronic production rates. A publicly available coincident muon cosmic ray detector design, the Berkeley Lab Cosmic Ray Detector (BLCRD), assembled by Juniata College, is evaluated in this work. The performance of the prototype is characterized by assessing its muon flux measurements. This evaluation is done by comparing data taken in identical scenarios with other cosmic ray telescopes. The prototype is made of two plastic scintillator paddles with associated electronics to measure energy depositions in coincidence in the two paddles. For this particular application of the prototype, the measurements performed concentrated on a broad investigation of the dependence of the muon flux on depth underground. These tests were conducted inside at Building 3420/1307 and underground at Building 3425 at the Pacific Northwest National Laboratory. The second half of this report analyzes modifications to the electronics of the BLCRD to make this detector portable. Among other modifications, a battery powered version of these electronics is proposed for the final Muon Witness design

Trielectrode plasma reactor for water treatment

Water pollution due to emerging organic pollutants, such as agrochemicals, has become a topic of growing interest worldwide. The increase of pollutants in aquatic systems stimulated the development of new strategies for water remediation. Plasma technology is an advanced oxidation process which has proved to be an efficient method for organic matter degradation. In this work, a novel design of a trielectrode plasma reactor based on a dielectric barrier discharge extended to a third electrode operated in ambient air is presented. The water to be treated flows through a gutter with low impedance and far from the electrodes connected to the voltage sources. The reactor operates in ambient air, and it does not rely on the use of expensive inert gases. The design of the reactor is easily scalable. The performance of the reactor, in terms of the removal efficiency and the energy yield, was tested in an aqueous solution of the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D), one of the most widely used around the world. The reactor presents a good efficiency in the removal of the herbicide 2,4-D and values of energy yield of about 240 mg/kW h.Fil: Giuliani, Leandro Estanislao. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Física del Plasma. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Física del Plasma; ArgentinaFil: De Angelis, L.. Instituto Tecnológico de Buenos Aires; ArgentinaFil: Díaz Bukvic, Gema. Instituto Tecnológico de Buenos Aires; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Zanini, Matías. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Física del Plasma. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Física del Plasma; ArgentinaFil: Minotti, Fernando Oscar. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Física del Plasma. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Física del Plasma; ArgentinaFil: Errea, María Inés. Instituto Tecnológico de Buenos Aires; ArgentinaFil: Grondona, Diana Elena. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Física del Plasma. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Física del Plasma; Argentin

Evaluation of six single nucleotide polymorphisms for bovine traceability in the context of the argentine-chinese beef trade

Genetic traceability refers to methods associated with the identification of animals and their products through DNA characterization of individuals, breeds or species. To trace breeds, it is necessary to define the breed groups to analyze, and the most appropriate molecular marker set. The selection of genetic markers depends on the gene frequency distribution, the genetic distance among breeds and the presence of private alleles. In this study, we assessed six single nucleotide polymorphisms (SNPs) located in the DGAT1, TG, LEP, GH, FABP4 and GnRHR genes, as potential genetic markers to be included into a panel for genetic traceability for the identification of breed origin associated with the bovine beef trade. The results of the genetic characterization of four of the main Chinese cattle populations and of the principal breeds raised in Argentina and in the world (five Bos taurus and two B. indicus) suggest that these SNP markers can be successfully used as a part of an effective traceability system for the identification of cattle breed origin in the context of the Chinese meat imports, and in particular in the Argentine-Chinese beef trade.La trazabilidad genética, la cual se basa en la identificación de animales y sus productos, permite la identificación individual, racial o de especie. Esta metodología es útil para detectar fraudes y valorizar producciones locales. Para llevar a cabo la trazabilidad es necesario definir los grupos raciales a analizar y el panel de marcadores más apropiados a utilizar. La selección de marcadores depende de la distribución de las frecuencias génicas, de la distancia genética entre las razas y de la presencia de alelos privativos. El objetivo de este trabajo consistió en evaluar seis polimorfismos de nucleótido simple (SNPs) ubicados en los genes DGAT1, TG, LEP, GH, FABP4 y GnRHR como posibles marcadores genéticos apropiados para ser incluidos en un panel de trazabilidad para la identificación de la raza de origen en el contexto de la comercialización de carne bovina. Los resultados de la caracterización genética de cuatro de las principales poblaciones bovinas chinas y de las razas más importantes de nuestro país (cinco Bos taurus y dos B. indicus) sugieren que los marcadores estudiados pueden ser utilizados exitosamente como parte de un sistema de trazabilidad efectivo para identificar el origen de la carne bovina en el contexto de la importación de carne en el mercado chino y en particular en el comercio entre Argentina y China.Fil: Ripoli, María Verónica. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; ArgentinaFil: Wei, S.. Chinese Academy of Agricultural Sciences; ChinaFil: Rogberg Muñoz, Andres. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; ArgentinaFil: Guo, B. L.. Chinese Academy of Agricultural Sciences; ChinaFil: Goszczynski, Daniel Estanislao. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; ArgentinaFil: Fernandez, María Elena. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; ArgentinaFil: Melucci, L.. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires. Estación Experimental Agropecuaria Balcarce; Argentina. Universidad Nacional de Mar del Plata. Facultad de Ciencias Agrarias; ArgentinaFil: Liron, Juan Pedro. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; ArgentinaFil: Villarreal, E.. Instituto Nacional de Tecnología Agropecuaria. Centro Regional Buenos Aires. Estación Experimental Agropecuaria Balcarce; Argentina. Universidad Nacional de Mar del Plata. Facultad de Ciencias Agrarias; ArgentinaFil: Wei, Y. M.. Chinese Academy of Agricultural Sciences; ChinaFil: Giovambattista, Guillermo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Genética Veterinaria "Ingeniero Fernando Noel Dulout"; Argentina. Universidad Nacional de La Plata. Facultad de Ciencias Veterinarias; Argentin

Genetic variation in FABP4 and evaluation of its effects on beef cattle fat content

FABP4 is a protein primarily expressed in adipocytes and macrophages that plays a key role in fatty acid trafficking and lipid hydrolysis. FABP4 gene polymorphisms have been associated with meat quality traits in cattle, mostly in Asian breeds under feedlot conditions. The objectives of this work were to characterize FABP4 genetic variation in several worldwide cattle breeds and evaluate possible genotype effects on fat content in a pasture-fed crossbred (Angus-Hereford-Limousin) population. We re-sequenced 43 unrelated animals from nine cattle breeds (Angus, Brahman, Creole, Hereford, Holstein, Limousin, Nelore, Shorthorn, and Wagyu) and obtained 22 single nucleotide polymorphisms (SNPs) over 3,164 bp, including four novel polymorphisms. Haplotypes and linkage disequilibrium analyses showed a high variability. Five SNPs were selected to perform validation and association studies in our crossbred population. Four SNPs showed well-balanced allele frequencies (minor frequency > 0.159), and three showed no significant deviations from Hardy-Weinberg proportions. SNPs showed significant effects on backfat thickness and fatty acid composition (P < 0.05). The protein structure of one of the missense SNPs was analyzed to elucidate its possible effect on fat content in our studied population. Our results revealed a possible blockage of the fatty acid binding site by the missense mutation.Instituto de Genética Veterinari

Evaluation of six single nucleotide polymorphisms for bovine traceability in the context of the argentine-chinese beef trade

Genetic traceability refers to methods associated with the identification of animals and their products through DNA characterization of individuals, breeds or species. To trace breeds, it is necessary to define the breed groups to analyze, and the most appropriate molecular marker set. The selection of genetic markers depends on the gene frequency distribution, the genetic distance among breeds and the presence of private alleles. In this study, we assessed six single nucleotide polymorphisms (SNPs) located in the DGAT1, TG, LEP, GH, FABP4 and GnRHR genes, as potential genetic markers to be included into a panel for genetic traceability for the identification of breed origin associated with the bovine beef trade. The results of the genetic characterization of four of the main Chinese cattle populations and of the principal breeds raised in Argentina and in the world (five Bos taurus and two B. indicus) suggest that these SNP markers can be successfully used as a part of an effective traceability system for the identification of cattle breed origin in the context of the Chinese meat imports, and in particular in the Argentine-Chinese beef trade.La trazabilidad genética, la cual se basa en la identificación de animales y sus productos, permite la identificación individual, racial o de especie. Esta metodología es útil para detectar fraudes y valorizar producciones locales. Para llevar a cabo la trazabilidad es necesario definir los grupos raciales a analizar y el panel de marcadores más apropiados a utilizar. La selección de marcadores depende de la distribución de las frecuencias génicas, de la distancia genética entre las razas y de la presencia de alelos privativos. El objetivo de este trabajo consistió en evaluar seis polimorfismos de nucleótido simple (SNPs) ubicados en los genes DGAT1, TG, LEP, GH, FABP4 y GnRHR como posibles marcadores genéticos apropiados para ser incluidos en un panel de trazabilidad para la identificación de la raza de origen en el contexto de la comercialización de carne bovina. Los resultados de la caracterización genética de cuatro de las principales poblaciones bovinas chinas y de las razas más importantes de nuestro país (cinco Bos taurus y dos B. indicus) sugieren que los marcadores estudiados pueden ser utilizados exitosamente como parte de un sistema de trazabilidad efectivo para identificar el origen de la carne bovina en el contexto de la importación de carne en el mercado chino y en particular en el comercio entre Argentina y China.Instituto de Genética Veterinari

Majorana One-Tonne Cryostat Cooling Conceptual Feasibility Study Rev 1

This report evaluates the conceptual plans for a cryostat cooling design for the MAJORANA DEMONSTRATOR (MJD) one-tonne (S4) experiment. This document is based upon previous design work and experimental results used to evaluate the current MJD thermal design. A feasibility study of a cooling system for S4 based on the MJD thermosiphon experiment is presented. The one-tonne experiment will be a scaled up version of the MJD. There will be many cryostats in the S4 experiment. In this document a cryostat with up to 19 strings of germanium crystals is analyzed. Aside from an extra outer ring of crystals, the geometry of the cryostat for S4 is very similar to that for the MJD thermosiphon experiment. The materials used in the fabrication of both of these ultra-low background experiments will be underground-electroformed copper. The current MJD uses a two-phase liquid-gas cooling system to provide constant operating temperature. This document presents a theoretical investigation of a cooling system for the S4 experiment and evaluates the heat transfer performance requirements for such a system

Recommendations for a Static Cosmic Ray Shield for Enriched Germanium Detectors

This document provides a detailed study of cost and materials that could be used to shield the detector material of the international Tonne-scale germanium neutrinoless double-beta decay experiment from hadronic particles from cosmic ray showers at the Earth's surface. This work was motivated by the need for a shield that minimizes activation of the enriched germanium during storage; in particular, when the detector material is being worked on at the detector manufacturer's facility. This work considers two options for shielding the detector material from cosmic ray particles. One option is to use a pre-existing structure already located near the detector manufacturer, such as Canberra Industries in Meriden, Connecticut. The other option is to build a shield onsite at a detector manufacturer's site. This paper presents a cost and efficiency analysis of such construction