Evidence for DCO+ as a probe of ionization in the warm disk surface

In this Letter we model the chemistry of DCO$^{+}$ in protoplanetary disks. We find that the overall distribution of the DCO$^{+}$ abundance is qualitatively similar to that of CO but is dominated by thin layer located at the inner disk surface. To understand its distribution, we investigate the different key gas-phase deuteration pathways that can lead to the formation of DCO$^{+}$. Our analysis shows that the recent update in the exothermicity of the reaction involving CH$_2$D$^{+}$ as a parent molecule of DCO$^{+}$ favors deuterium fractionation in warmer conditions. As a result the formation of DCO$^{+}$ is enhanced in the inner warm surface layers of the disk where X-ray ionization occurs. Our analysis points out that DCO$^{+}$ is not a reliable tracer of the CO snow line as previously suggested. We thus predict that DCO$^{+}$ is a tracer of active deuterium and in particular X-ray ionization of the inner disk.Comment: Accepted for publication in the Astrophysical Journal Letters (ApJL). 11 pages, 5 figure

Systematic Design of Fully Balanced Differential Current-Mode Multiple-Loop Feedback Filters Using CFBCCII

In this paper, a systematic design method producing balanced current-mode filters is proposed, using current controlled fully balanced second-generation current conveyor circuit (CFBCCII). In this method, many kind of all-pole multiple loop feedback (MF) current mode balanced filters can be obtained, all the produced filters have fully balance structures. Moreover, the frequency of the filters can be electronically adjustable. The produced nth-order filters are constructed by n CFBCCIIs and 2n grounded capacitors, no resistors are needed. The sensitivities of the filters and influences of CFBCCII parasitic elements on filters are analyzed

Minimum Configuration Insensitive Multifunctional Current-Mode Biquad Using Current Conveyors and All-Grounded Passive Components

This paper proposes a new current conveyorbased high-output impedance single-input three-output current mode filter with minimum configuration. It contains two dual output second generation current conveyors, one third generation dual output current conveyor, and four grounded resistors and capacitors. The circuit simultaneously provides low-pass, band-pass, and high-pass filtering outputs, without any passive component matching conditions and restrictions on input signals. Additionally, the proposed circuit offers following advantages: Minimum active and passive element count, high output and low input impedances, suitable for cascading identical currentmode sections, all passive elements are grounded (no virtual grounding), low natural frequency and Q-factor sensitivities. The influences of non-ideal current conveyors on the proposed circuit are researched in the last

Simultaneous Observations of Comet C/2002 T7 (LINEAR) with the Berkeley-Illinois-Maryland Association and Owens Valley Radio Observatory Interferometers: HCN and CH_3OH

We present observations of HCN J = 1-0 and CH_3OH J(K_a, K_c) = 3(1, 3)-4(0, 4) A+ emission from comet C/2002 T7 (LINEAR) obtained simultaneously with the Owens Valley Radio Observatory (OVRO) and Berkeley-Illinois-Maryland Association (BIMA) millimeter interferometers. We combined the data from both arrays to increase the (u, v) sampling and signal to noise of the detected line emission. We also report the detection of CH_3OH J(K_a, K_c) = 8(0, 8)-7(1, 7) A^+ with OVRO data alone. Using a molecular excitation code that includes the effects of collisions with water and electrons, as well as pumping by the Solar infrared photons (for HCN alone), we find a production rate of HCN of 2.9 × 10^(26) s^(–1) and for CH_3OH of 2.2 × 10^(27) s^(–1). Compared to the adopted water production rate of 3 × 10^(29) s^(–1), this corresponds to an HCN/H_2O ratio of 0.1% and a CH_3OH/H_2O ratio of 0.7%. We critically assess the uncertainty of these values due to the noise (~10%), the uncertainties in the adopted comet model (~50%), and the uncertainties in the adopted collisional excitation rates (up to a factor of 2). Pumping by Solar infrared photons is found to be a minor effect for HCN, because our 15" synthesized beam is dominated by the region in the coma where collisions dominate. Since the uncertainties in the derived production rates are at least as large as one-third of the differences found between comets, we conclude that reliable collision rates and an accurate comet model are essential. Because the collisionally dominated region critically depends on the water production rate, using the same approximate method for different comets may introduce biases in the derived production rates. Multiline observations that directly constrain the molecular excitation provide much more reliable production rates

Imaging the Disk around TW Hydrae with the Submillimeter Array

We present ~2"-4" aperture synthesis observations of the circumstellar disk surrounding the nearby young star TW Hya in the CO J = 2-1 and J = 3-2 lines and associated dust continuum obtained with the partially completed Submillimeter Array. The extent and peak flux of the 230 and 345 GHz dust emission follow closely the predictions of the irradiated accretion disk model of Calvet et al. The resolved molecular line emission extends to a radius of at least 200 AU, the full extent of the disk visible in scattered light, and shows a clear pattern of Keplerian rotation. Comparison of the images with two-dimensional Monte Carlo models constrains the disk inclination angle to 7° ± 1°. The CO emission is optically thick in both lines, and the kinetic temperature in the line formation region is ~20 K. Substantial CO depletion, by an order of magnitude or more from canonical dark cloud values, is required to explain the characteristics of the line emission

Structure of the Brd4 ET domain bound to a C-terminal motif from γ-retroviral integrases reveals a conserved mechanism of interaction

The bromodomain and extraterminal domain (BET) protein family are promising therapeutic targets for a range of diseases linked to transcriptional activation, cancer, viral latency, and viral integration. Tandem bromodomains selectively tether BET proteins to chromatin by engaging cognate acetylated histone marks, and the extraterminal (ET) domain is the focal point for recruiting a range of cellular and viral proteins. BET proteins guide γ-retroviral integration to transcription start sites and enhancers through bimodal interaction with chromatin and the γ-retroviral integrase (IN). We report the NMR-derived solution structure of the Brd4 ET domain bound to a conserved peptide sequence from the C terminus of murine leukemia virus (MLV) IN. The complex reveals a protein–protein interaction governed by the binding-coupled folding of disordered regions in both interacting partners to form a well-structured intermolecular three-stranded β sheet. In addition, we show that a peptide comprising the ET binding motif (EBM) of MLV IN can disrupt the cognate interaction of Brd4 with NSD3, and that substitutions of Brd4 ET residues essential for binding MLV IN also impair interaction of Brd4 with a number of cellular partners involved in transcriptional regulation and chromatin remodeling. This suggests that γ-retroviruses have evolved the EBM to mimic a cognate interaction motif to achieve effective integration in host chromatin. Collectively, our findings identify key structural features of the ET domain of Brd4 that allow for interactions with both cellular and viral proteins

Organic Molecules in Low-Mass Protostellar Hot Cores: Submillimeter Imaging of IRAS 16293-2422

Arcsecond-resolution spectral observations toward the protobinary system IRAS 16293-2422 at 344 and 354 GHz were conducted using the Submillimeter Array. Complex organic molecules such as CH3OH and HCOOCH3 were detected. Together with the rich organic inventory revealed, it clearly indicates the existence of two, rather than one, compact hot molecular cores (smaller than or equal to 400 AU in radius) associated with each of the protobinary components identified by their dust continuum emission in the inner star-forming core.Comment: 11 pages, 3 figures, to be published in ApJ

Beam Orientation Optimization for Intensity Modulated Radiation Therapy using Adaptive l1 Minimization

Beam orientation optimization (BOO) is a key component in the process of IMRT treatment planning. It determines to what degree one can achieve a good treatment plan quality in the subsequent plan optimization process. In this paper, we have developed a BOO algorithm via adaptive l_1 minimization. Specifically, we introduce a sparsity energy function term into our model which contains weighting factors for each beam angle adaptively adjusted during the optimization process. Such an energy term favors small number of beam angles. By optimizing a total energy function containing a dosimetric term and the sparsity term, we are able to identify the unimportant beam angles and gradually remove them without largely sacrificing the dosimetric objective. In one typical prostate case, the convergence property of our algorithm, as well as the how the beam angles are selected during the optimization process, is demonstrated. Fluence map optimization (FMO) is then performed based on the optimized beam angles. The resulted plan quality is presented and found to be better than that obtained from unoptimized (equiangular) beam orientations. We have further systematically validated our algorithm in the contexts of 5-9 coplanar beams for 5 prostate cases and 1 head and neck case. For each case, the final FMO objective function value is used to compare the optimized beam orientations and the equiangular ones. It is found that, our BOO algorithm can lead to beam configurations which attain lower FMO objective function values than corresponding equiangular cases, indicating the effectiveness of our BOO algorithm.Comment: 19 pages, 2 tables, and 5 figure