Investigating postharvest chilling injury in tomato (Solanum lycopersicum L.) fruit using magnetic resonance imaging and 5-azacytidine, a hypomethylation agent

Tomato, like most species from tropical and subtropical regions, exhibits postharvest chilling injury (PCI) when stored at low temperatures. Because of its economic importance and the functional genomics tools available, we used tomato to investigate aspects of fruit PCI development. We asked two questions: First, are there spatial-temporal differences in the development of PCI that can be detected by magnetic resonance imaging (MRI)? Here, the aim was to use a non-invasive method to study PCI progression in vivo. At mature green and breaker, the pericarp, locular tissue and columella produced distinct D-values while in contrast, there was no such differentiation in riper fruit. Although the pericarp is where most PCI symptoms are visible, this tissue showed less dynamism upon cold exposure, compared to the inner tissues as detected by MRI. This suggests the occurrence of distinct, independently modulated mechanisms contributing to the development of PCI-symptomatology. Collectively our data showed that the MRI could detect fruit ripening, its attenuation by cold, and fruit tissue-specific responses to chilling stress. The second question we asked was if epigenetic modification of the tomato genome or transcriptome influences PCI response. We examined PCI severity in fruit injected with a demethylating agent, 5- azacytidine (AZA). Two tomato genotypes exposed to varying severities of cold-stress were studied. Results suggested that AZA was able to moderate PCI in 'Micro-Tom' after 3 weeks at 2.5°C, while different patterns were observed in 'Sun Cherry' across various cold treatments. The effects of AZA on PCI were complex, multilayered and highly context-dependent

Reducing complexity and unidentifiability when modelling human atrial cells

Mathematical models of a cellular action potential in cardiac modelling have become increasingly complex, particularly in gating kinetics which control the opening and closing of individual ion channel currents. As cardiac models advance towards use in personalised medicine to inform clinical decision-making, it is critical to understand the uncertainty hidden in parameter estimates from their calibration to experimental data. This study applies approximate Bayesian computation to re-calibrate the gating kinetics of four ion channels in two existing human atrial cell models to their original datasets, providing a measure of uncertainty and indication of potential issues with selecting a single unique value given the available experimental data. Two approaches are investigated to reduce the uncertainty present: re-calibrating the models to a more complete dataset and using a less complex formulation with fewer parameters to constrain. The re-calibrated models are inserted back into the full cell model to study the overall effect on the action potential. The use of more complete datasets does not eliminate uncertainty present in parameter estimates. The less complex model, particularly for the fast sodium current, gave a better fit to experimental data alongside lower parameter uncertainty and improved computational speed

Experimental study of vortex breakdown in a cylindrical, swirling flow

The stability of a steady, vortical flow in a cylindrical container with one rotating endwall has been experimentally examined to gain insight into the process of vortex breakdowwn. The dynamics of the flow are governed by the Reynolds number (Re) and the aspect ratio of the cylinder. Re is given by Omega R(sup 2)/nu, where Omega is the speed of rotation of the endwall, R is the cylinder radius, and nu is the kinematic viscosity of the fluid filling the cylinder. The aspect ratio is H/R, where H is the height of the cylinder. Numerical simulation studies disagree whether or not the steady breakdown is stable beyond a critical Reynolds number, Re(sub c). Previous experimental researches have considered the steady and unsteady flows near Re(sub c), but have not explored the stability of the steady breakdown structures beyond this value. In this investigation, laser induced fluorescence was utilized to observe both steady and unsteady vortex breakdown at a fixed H/R of 2.5 with Re varying around Re(sub c). When the Re of a steady flow was slowly increased beyond Re(sub c), the breakdown structure remained steady even though unsteadiness was possible. In addition, a number of hysteresis events involving the oscillation periods of the unsteady flow were noted. The results show that both steady and unsteady vortex breakdown occur for a limited range of Re above Re(sub c). Also, with increasing Re, complex flow transformations take place that alter the period at which the unsteady flow oscillates