Dynamique et orientation de peptides transmembranaires (étude couplant calculs quantiques et RMN du solide)

TOULOUSE3-BU Sciences (315552104) / SudocSudocFranceF

Modelling the influence of hydrogen bond network on chemical shielding tensors description. GIAO-DFT study of WALP23 transmembrane α-helix as a test case

International audienceDensity Functional Theory (B3LYP/6-31G(d,p)) calculations of 15 N amide and 13 C carbonyl NMR chemical shielding tensors have been performed on WALP23 trans-membrane -helix peptide and 10 compared to solid state NMR experiment performed on [ 13 C1-Ala13, 15 N-Leu14] specifically labelled peptide powder sample. Using either theoretical result obtained on the whole peptide or experimental data as reference, several simplest chemical models have been explored in order to reduce the computational cost while maintaining good theoretical accuracy. From this study, it appears that the hydrogen bond (N-H…O=C) network that exists in the -helix has a major 15 influence on the chemical shielding tensor and more specifically on the carbonyl 13 C 22 eigenvalue. We show that a small truncated WALP_7 model is not adequate for 13 C1 NMR description. The application of an external electric field in order to model the hydr ogen bond network allows calculating chemical shielding tensors with accurate eigenvalues while the associated eigenvectors are largely modified. Finally, a 23 residues polyglycine peptide that 20 includes the Alanine and Leucine residues for which NMR parameters must be calculated is proposed as the chemical model. This model is sufficient to mostly reproduce the calculation performed on WALP23 with major gain in computational time. Moreover, the application of an external electric field allows reaching the experimental accuracy for the determination of the eigenvalues. 2

Order Parameters of a Transmembrane Helix in a Fluid Bilayer: Case Study of a WALP Peptide

A new solid-state NMR-based strategy is established for the precise and efficient analysis of orientation and dynamics of transmembrane peptides in fluid bilayers. For this purpose, several dynamically averaged anisotropic constraints, including 13C and 15N chemical shift anisotropies and 13C-15N dipolar couplings, were determined from two different triple-isotope-labeled WALP23 peptides (2H, 13C, and 15N) and combined with previously published quadrupolar splittings of the same peptide. Chemical shift anisotropy tensor orientations were determined with quantum chemistry. The complete set of experimental constraints was analyzed using a generalized, four-parameter dynamic model of the peptide motion, including tilt and rotation angle and two associated order parameters. A tilt angle of 21° was determined for WALP23 in dimyristoylphosphatidylcholine, which is much larger than the tilt angle of 5.5° previously determined from 2H NMR experiments. This approach provided a realistic value for the tilt angle of WALP23 peptide in the presence of hydrophobic mismatch, and can be applied to any transmembrane helical peptide. The influence of the experimental data set on the solution space is discussed, as are potential sources of error