Oxygen in the Tropical Pacific POSTRE II First Tracer Survey, Cruise No. M135, March 01 - April 08, 2017, Valparaiso (Chile) - Callao (Peru) POSTRE-III

Cruise M135 was a contribution to the DFG Collaborative Research Project (SFB) 754: “Climate-Biogeochemistry Interactions in the Tropical Ocean” with the main goal to better understand the the role of diffusive and advective pathways connecting water within the bottom boundary layer (i.e. the water directly affected by sediment processes) to the pelagic and surface ocean. To achieve this, we have injected a conservative tracer (CF3SF5) within the bottom boundary layer at three different sites along the Peruvian coast at a depth of about 300 m in October 2015 that was mapped during M135. Tracer sampling was carried out by measuring water samples from the CTD-rosette water bottles. In total 144 CTD casts were carried out. From 132 CTD profiles 2828 samples for CF3CF5 investigations were gained and on most stations the tracer could be found. In addition 48 trace metal CTD’s were recorded and trace metal and chemical samples taken from the rosette bottles. On 166 of the CTD profiles oxygen samples were taken and on 94 CTD profiles nutrient samples were collected. Microstructure measurements were made on 24 stations and 2 gliders were deployed. For geological investigations at 5 locations multicorer and long gravity cores were taken. Continuous underway measurements of CO2,N2O and CO as well as continuous ADCP and thermosalinograph recording was made on 37 days. The cruise M135 was very successful; most systems on METEOR worked well and all planned objectives were reached

Time to Recurrence and Survival in Serous Ovarian Tumors Predicted from Integrated Genomic Profiles

Serous ovarian cancer (SeOvCa) is an aggressive disease with differential and often inadequate therapeutic outcome after standard treatment. The Cancer Genome Atlas (TCGA) has provided rich molecular and genetic profiles from hundreds of primary surgical samples. These profiles confirm mutations of TP53 in ∼100% of patients and an extraordinarily complex profile of DNA copy number changes with considerable patient-to-patient diversity. This raises the joint challenge of exploiting all new available datasets and reducing their confounding complexity for the purpose of predicting clinical outcomes and identifying disease relevant pathway alterations. We therefore set out to use multi-data type genomic profiles (mRNA, DNA methylation, DNA copy-number alteration and microRNA) available from TCGA to identify prognostic signatures for the prediction of progression-free survival (PFS) and overall survival (OS). prediction algorithm and applied it to two datasets integrated from the four genomic data types. We (1) selected features through cross-validation; (2) generated a prognostic index for patient risk stratification; and (3) directly predicted continuous clinical outcome measures, that is, the time to recurrence and survival time. We used Kaplan-Meier p-values, hazard ratios (HR), and concordance probability estimates (CPE) to assess prediction performance, comparing separate and integrated datasets. Data integration resulted in the best PFS signature (withheld data: p-value = 0.008; HR = 2.83; CPE = 0.72).We provide a prediction tool that inputs genomic profiles of primary surgical samples and generates patient-specific predictions for the time to recurrence and survival, along with outcome risk predictions. Using integrated genomic profiles resulted in information gain for prediction of outcomes. Pathway analysis provided potential insights into functional changes affecting disease progression. The prognostic signatures, if prospectively validated, may be useful for interpreting therapeutic outcomes for clinical trials that aim to improve the therapy for SeOvCa patients

Community metabolism in shallow coral reef and seagrass ecosystems, lower Florida Keys

Diurnal variation of net community production (NEP) and net community calcification (NEC) were measured in coral reef and seagrass biomes during October 2012 in the lower Florida Keys using a mesocosm enclosure and the oxygen gradient flux technique. Seagrass and coral reef sites showed diurnal variations of NEP and NEC, with positive values at near-seafloor light levels >100-300 µEinstein/m**2/s. During daylight hours, we detected an average NEP of 12.3 and 8.6 mmol O2/m**2/h at the seagrass and coral reef site, respectively. At night, NEP at the seagrass site was relatively constant, while on the coral reef, net respiration was highest immediately after dusk and decreased during the rest of the night. At the seagrass site, NEC values ranged from 0.20 g CaCO3 /m**2/h during daylight to -0.15 g CaCO3/m**2/h at night, and from 0.17 to -0.10 g CaCO3/m**2/h at the coral reef site. There were no significant differences in pH and aragonite saturation states (Omega ar) between the seagrass and coral reef sites. Decrease in light levels during thunderstorms significantly decreased NEP, transforming the system from net autotrophic to net heterotrophic