3,205 research outputs found
Biomedical Event Trigger Identification Using Bidirectional Recurrent Neural Network Based Models
Biomedical events describe complex interactions between various biomedical
entities. Event trigger is a word or a phrase which typically signifies the
occurrence of an event. Event trigger identification is an important first step
in all event extraction methods. However many of the current approaches either
rely on complex hand-crafted features or consider features only within a
window. In this paper we propose a method that takes the advantage of recurrent
neural network (RNN) to extract higher level features present across the
sentence. Thus hidden state representation of RNN along with word and entity
type embedding as features avoid relying on the complex hand-crafted features
generated using various NLP toolkits. Our experiments have shown to achieve
state-of-art F1-score on Multi Level Event Extraction (MLEE) corpus. We have
also performed category-wise analysis of the result and discussed the
importance of various features in trigger identification task.Comment: The work has been accepted in BioNLP at ACL-201
Ultrafast photoinduced enhancement of nonlinear optical response in 15-atom gold clusters on indium tin oxide conducting film
We show that the third order optical nonlinearity of 15-atom gold clusters is
significantly enhanced when in contact with indium tin oxide (ITO) conducting
film. Open and close aperture z-scan experiments together with non-degenerate
pump-probe differential transmission experiments were done using 80 fs laser
pulses centered at 395 nm and 790 nm on gold clusters encased inside
cyclodextrin cavities. We show that two photon absorption coefficient is
enhanced by an order of magnitude as compared to that when the clusters are on
pristine glass plate. The enhancement for the nonlinear optical refraction
coefficient is ~3 times. The photo-induced excited state absorption using
pump-probe experiments at pump wavelength of 395 nm and probe at 790 nm also
show an enhancement by an order of magnitude. These results attributed to the
excited state energy transfer in the coupled gold cluster-ITO system are
different from the enhancement seen so far in charge donor-acceptor complexes
and nanoparticle-conjugate polymer composites.Comment: To appear in Optics Express (2013);
http://dx.doi.org/10.1364/OE.21.00848
Femtosecond Photoexcited Carrier Dynamics in Reduced Graphene Oxide Suspensions and Films
We report ultrafast response of femtosecond photoexcited carriers in single
layer reduced graphene oxide flakes suspended in water as well as few layer
thick film deposited on indium tin oxide coated glass plate using pump-probe
differential transmission spectroscopy at 790 nm. The carrier relaxation
dynamics has three components: ~200 fs, 1 to 2 ps, and ~25 ps, all of them
independent of pump fluence. It is seen that the second component (1 to 2 ps)
assigned to the lifetime of hot optical phonons is larger for graphene in
suspensions whereas other two time constants are the same for both the
suspension and the film. The value of third order nonlinear susceptibility
estimated from the pump-probe experiments is compared with that obtained from
the open aperture Z-scan results for the suspension.Comment: 4 pages, 4 figures, to appear in International Journal of Nanoscience
(IJN), 201
Anomalously Slow Domain Growth in Fluid Membranes with Asymmetric Transbilayer Lipid Distribution
The effect of asymmetry in the transbilayer lipid distribution on the
dynamics of phase separation in fluid vesicles is investigated numerically for
the first time. This asymmetry is shown to set a spontaneous curvature for the
domains that alter the morphology and dynamics considerably. For moderate
tension, the domains are capped and the spontaneous curvature leads to
anomalously slow dynamics, as compared to the case of symmetric bilayers. In
contrast, in the limiting cases of high and low tensions, the dynamics proceeds
towards full phase separation.Comment: 4 pages, 5 figure
Studies on the growth of the marine microalga Dunaliella salina (Teodoresco)
The present paper reports on the growth pattern of Dunaliella salina cells cultured
in different salinities and also in stressed conditions on exposure to
mutagens (UV and PEG). The cultures were maintained in different salinities
viz., 20, 25, 30, 35, 40, 45 and 50 ppt for a period of two weeks in triplicates and
the growth rate was monitored. The peak growth (14.29 lakhs) was observed in
35 ppt on eleventh day indicating the ideal salinity for the culture of this species.
The cultures in mid-exponential growth phase were exposed to UV light
for 30 and 60 minutes and PEG at four doses viz. 0.125, 0.25, 0.5 and 1 gm/ml.
Poorest cell growth was observed for half an hour UV treated cultures (3.51
lakhs/ml). A proportionate decrease in cell count was noticed with increase in
the concentration of PEG
A New Adjustment of Laplace Transform for Fractional Bloch Equation in NMR Flow
This work purpose suggest a new analytical technique called the fractional homotopy analysis transform method (FHATM) for solving time fractional Bloch NMR (nuclear magnetic resonance) flow equations, which are a set of macroscopic equations that are used for modeling nuclear magnetization as a function of time. The true beauty of this article is the coupling of the homotopy analysis method and the Laplace transform method for systems of fractional differential equations. The solutions obtained by the proposed method indicate that the approach is easy to implement and computationally very attractive
Acoustic and optical phonon dynamics from femtosecond time-resolved optical spectroscopy of superconducting iron pnictide Ca(Fe_0.944Co_0.056)_2As_2
We report temperature evolution of coherently excited acoustic and optical
phonon dynamics in superconducting iron pnictide single crystal
Ca(Fe_0.944Co_0.056)_2As_2 across the spin density wave transition at T_SDW ~
85 K and superconducting transition at T_SC ~20 K. Strain pulse propagation
model applied to the generation of the acoustic phonons yields the temperature
dependence of the optical constants, and longitudinal and transverse sound
velocities in the temperature range of 3.1 K to 300 K. The frequency and
dephasing times of the phonons show anomalous temperature dependence below T_SC
indicating a coupling of these low energy excitations with the Cooper-pair
quasiparticles. A maximum in the amplitude of the acoustic modes at T ~ 170 is
seen, attributed to spin fluctuations and strong spin-lattice coupling before
T_SDW.Comment: 6 pages, 4 figures (revised manuscript
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