Quality and Vitamins in Forage Herb and Legume Species

Grasslands provide an important part of the feed used by domestic and wild ruminants. Fresh herbage is an important natural source of vitamins in ruminant diets. Concentrations of vitamins in plants depend on factors such as regrowth stage, temperature and day length, N fertilisation and leaf proportion in the harvested herbage. Most studies on vitamin concentrations in forages have been carried out with agronomical important grass species such as perennial ryegrass and legume species such as white clover, but hardly with other grassland forage species. As data of dicotyledonous species grown in a sward are scarce, yield, quality and vitamin contents in a number of herb (hereafter referred to as forb) and legume species were compared to a grass-clover mixture to get an insight into species differences

Investigation of the presence and antinociceptive function of muscarinic acetylcholine receptors in the African naked mole-rat (<i>Heterocephalus glaber</i>)

The present study investigated the cholinergic system in the African naked mole-rat (Heterocephalus glaber) with focus on the muscarinic acetylcholine receptor subtypes M(1) and M(4). The protein sequences for the subtypes m(1–5) of the naked mole-rat were compared to that of the house mouse (Mus musculus) using basic local alignment search tool (BLAST). The presence and function of M(1) and M(4) was investigated in vivo, using the formalin test with the muscarinic receptor agonists xanomeline and VU0152100. Spinal cord tissue from the naked mole-rat was used for receptor saturation binding studies with [(3)H]-N-methylscopolamine. The BLAST test revealed 95 % protein sequence homology showing the naked mole-rat to have the genetic potential to express all five muscarinic acetylcholine receptor subtypes. A significant reduction in pain behavior was demonstrated after administration of 8.4 mg/kg in the formalin test. Administration of 50 mg/kg VU0152100 resulted in a non-significant tendency towards antinociception. The antinociceptive effects were reversed by the muscarinic acetylcholine receptor antagonist atropine. Binding studies indicated presence of muscarinic acetylcholine receptors with a radioligand affinity comparable to that reported in mice. In conclusion, muscarinic acetylcholine receptor subtypes are present in the naked mole-rat and contribute to antinociception in the naked mole-rat

A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana.

Target gene identification for transcription factors is a prerequisite for the systems wide understanding of organismal behaviour. NAM-ATAF1/2-CUC2 (NAC) transcription factors are amongst the largest transcription factor families in plants, yet limited data exist from unbiased approaches to resolve the DNA-binding preferences of individual members. Here, we present a TF-target gene identification workflow based on the integration of novel protein binding microarray data with gene expression and multi-species promoter sequence conservation to identify the DNA-binding specificities and the gene regulatory networks of 12 NAC transcription factors. Our data offer specific single-base resolution fingerprints for most TFs studied and indicate that NAC DNA-binding specificities might be predicted from their DNA-binding domain's sequence. The developed methodology, including the application of complementary functional genomics filters, makes it possible to translate, for each TF, protein binding microarray data into a set of high-quality target genes. With this approach, we confirm NAC target genes reported from independent in vivo analyses. We emphasize that candidate target gene sets together with the workflow associated with functional modules offer a strong resource to unravel the regulatory potential of NAC genes and that this workflow could be used to study other families of transcription factors

ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana.

ATAF1, an Arabidopsis thaliana NAC transcription factor, plays important roles in plant adaptation to environmental stress and development. To search for ATAF1 target genes, we used protein binding microarrays and chromatin-immunoprecipitation (ChIP). This identified T[A,C,G]CGT[A,G] and TT[A,C,G]CGT as ATAF1 consensus binding sequences. Co-expression analysis across publicly available microarray experiments identified 25 genes co-expressed with ATAF1. The promoter regions of ATAF1 co-expressors were significantly enriched for ATAF1 binding sites, and TTGCGTA was identified in the promoter of the key abscisic acid (ABA) phytohormone biosynthetic gene NCED3. ChIP-qPCR and expression analysis showed that ATAF1 binding to the NCED3 promoter correlated with increased NCED3 expression and ABA hormone levels. These results indicate that ATAF1 regulates ABA biosynthesis

Vitamin contents in forage herbs

Summary Grasslands provide an important part of the feed used by domestic and wild ruminants. Fresh forages are an important natural source of vitamins in ruminant diets. Most studies in forages have been carried out with perennial ryegrass and legume species such as white clover. As yield and quality data of broad-leaf grassland species are scarce, the aim of this study was to obtain novel information on vitamins in a number of herb species compared to a grass-clover mixture and to get insight into species differences and seasonal patterns across the various harvests and years. Seven herb species and a perennial ryegrasswhite clover mixture were investigated in a cutting trial with four harvests (May-Oct) during 2009 and 2010. Vitamin concentrations were highest in October. The α-tocopherol concentrations were lowest in lucerne and yellow sweet clover, and highest in salad burnet and plantain. The β-carotene concentrations were lowest in lucerne, salad burnet and yellow sweet clover and highest in caraway, birdsfoot trefoil and plantain. As various herbs outperformed the grass-clover mixture regarding vitamin concentrations, these might provide added benefits in farming practice beyond higher biodiversity per se

NAC genes: Time-specific regulators of hormonal signaling in Arabidopsis

Environmental stresses on both animals and plants impose massive transcriptional perturbations. Successful adaptations to such stresses are being orchestrated by both activating and repressing effects of transcription factors on specific target genes. We have recently published a systematic characterization of members of the large NAC gene transcription factor family in the model weed Arabidopsis thaliana. Our analysis revealed interesting sub-groupings of the Arabidopsis NAC genes, relating structure and function. Here we present a meta-analysis revealing distinct temporal expression profiles of NAC genes upon stimuli with seven phytohormones. Our analysis could be a first indication of NAC-centered transcriptional networks, which coordinate timely hormonal signaling in plants

Structure, function and networks of transcription factors involved in abiotic stress responses

Transcription factors (TFs) are master regulators of abiotic stress responses in plants. This review focuses on TFs from seven major TF families, known to play functional roles in response to abiotic stresses, including drought, high salinity, high osmolarity, temperature extremes and the phytohormone ABA. Although ectopic expression of several TFs has improved abiotic stress tolerance in plants, fine-tuning of TF expression and protein levels remains a challenge to avoid crop yield loss. To further our understanding of TFs in abiotic stress responses, emerging gene regulatory networks based on TFs and their direct targets genes are presented. These revealed components shared between ABA-dependent and independent signaling as well as abiotic and biotic stress signaling. Protein structure analysis suggested that TFs hubs of large interactomes have extended regions with protein intrinsic disorder (ID), referring to their lack of fixed tertiary structures. ID is now an emerging topic in plant science. Furthermore, the importance of the ubiquitin-proteasome protein degradation systems and modification by sumoylation is also apparent from the interactomes. Therefore; TF interaction partners such as E3 ubiquitin ligases and TF regions with ID represent future targets for engineering improved abiotic stress tolerance in crops