Residues Clustered in the Light-Sensing Knot of Phytochrome B are Necessary for Conformer-Specific Binding to Signaling Partner PIF3

The bHLH transcription factor, PHYTOCHROME INTERACTING FACTOR 3 (PIF3), interacts specifically with the photoactivated, Pfr, form of Arabidopsis phytochrome B (phyB). This interaction induces PIF3 phosphorylation and degradation in vivo and modulates phyB-mediated seedling deetiolation in response to red light. To identify missense mutations in the phyB N-terminal domain that disrupt this interaction, we developed a yeast reverse-hybrid screen. Fifteen individual mutations identified in this screen, or in previous genetic screens for Arabidopsis mutants showing reduced sensitivity to red light, were shown to also disrupt light-induced binding of phyB to PIF3 in in vitro co-immunoprecipitation assays. These phyB missense mutants fall into two general classes: Class I (eleven mutants) containing those defective in light signal perception, due to aberrant chromophore attachment or photoconversion, and Class II (four mutants) containing those normal in signal perception, but defective in the capacity to transduce this signal to PIF3. By generating a homology model for the three-dimensional structure of the Arabidopsis phyB chromophore-binding region, based on the crystal structure of Deinococcus radiodurans phytochrome, we predict that three of the four Class II mutated phyB residues are solvent exposed in a cleft between the presumptive PAS and GAF domains. This deduction suggests that these residues could be directly required for the physical interaction of phyB with PIF3. Because these three residues are also necessary for phyB-imposed inhibition of hypocotyl elongation in response to red light, they are functionally necessary for signal transfer from photoactivated phyB, not only to PIF3 and other related bHLH transcription factors tested here, but also to other downstream signaling components involved in regulating seedling deetiolation

Polymorphisms of the TUB Gene Are Associated with Body Composition and Eating Behavior in Middle-Aged Women

BACKGROUND: The TUB gene, encoding an evolutionary conserved protein, is highly expressed in the hypothalamus and might act as a transcription factor. Mutations in TUB cause late-onset obesity, insulin-resistance and neurosensory deficits in mice. An association of common variants in the TUB gene with body weight in humans has been reported. METHODS/FINDINGS: The aim was to investigate the relationship of single nucleotide polymorphisms (SNPs) of the TUB gene (rs2272382, rs2272383 and rs1528133) with both anthropometry and self-reported macronutrient intake from a validated food frequency questionnaire. These associations were studied in a population-based, cross-sectional study of 1680 middle-aged Dutch women, using linear regression analysis. The minor allele C of the rs1528133 SNP was significantly associated with increased weight (+1.88 kg, P = 0.022) and BMI (+0.56 units, P = 0.05). Compared with non-carriers, both AG heterozygotes and AA homozygotes of the rs2272382 SNP derived less energy from fat (AG: -0.55+/-0.28%, P = 0.05, AA: -0.95+/-0.48%, P = 0.047). However, both genotypes were associated with an increased energy intake from carbohydrates (0.69+/-0.33%, P = 0.04 and 1.68+/-0.56%, P = 0.003, respectively), mainly because of a higher consumption of mono- and disaccharides. Both these SNPs, rs2272382 and rs1528133, were also associated with a higher glycemic load in the diet. The glycemic load was higher among those with AG and AA genotypes for the variant rs2272382 than among the wild types (+1.49 (95% CI: -0.27-3.24) and +3.89 (95% CI: 0.94-6.85) units, respectively). Carriers of the minor allele C of rs1528133 were associated with an increased glycemic load of 1.85 units compared with non-carriers. CONCLUSIONS: Genetic variation of the TUB gene was associated with both body composition and macronutrient intake, suggesting that TUB might influence eating behavior

Nature's contributions to people and quality of life

In this chapter, we provide an assessment of each of nature's contributions to people (NCP) and to the quality of life of societies in Europe and Central Asia. We recognize that these contributions are diverse, reflecting the multiple societies that inhabit the region and the multiple interlinked dimensions of nature and society. For that reason, the present chapter seeks to respect and to represent the multiple values of nature's contributions to people and to include the different knowledge systems that provide understanding of our relationship with nature

The OSIRIS-REx Contamination Control and Witness Strategy

The OSIRIS-REx mission (Origins, Spectral Interpretation, Resource Identification, and Security Regolith Explorer) is the third NASA New Frontiers mission. It is scheduled for launch in 2016. The primary objective of the mission is to return at least 60 g of "pristine" material from the B-type near- Earth asteroid (101955) Bennu, which is spectrally similar to organic-rich CI or CM meteorites [1]. The study of these samples will advance our understanding of materials available for the origin of life on Earth or elsewhere. The spacecraft will rendezvous with Bennu in 2018 and spend at least a year characterizing the asteroid before executing a maneuver to recover a sample of regolith in the touch-and-go sample acquisition mechanism (TAGSAM). The TAGSAM and sample is stowed in the sample return capsule (SRC) and returned to Earth in 2023

Soil fumigants provide multiple benefits; alternatives give mixed results

Since the 1950s growers have routinely used soil fumigants such as methyl bromide (MBr) and 1,3-dichloropropene (1,3-D) before replanting orchards and vineyards. Fumigants double plant growth in the early years after replanting and provide several years of nematode relief when resistant rootstocks are unavailable. However, the recent suspension of 1,3-D and the mandated phase-out of methyl bromide by 2001 have clouded the future of fumigant use. To develop alternatives, we must first document the pest control value and plant growth benefit of fumigation. Over the last decade, we have initiated several 2-year field trials in replant sites in the San Joaquin Valley. Our results quantify fumigation benefits and point to the feasibility of some alternatives, including a portable soil drencher

Molecular and functional characterization of Arabidopsis Cullin 3A

53 ref. doi: 10.1111/j.1365-313X.2004.02302.xInternational audienc