53 research outputs found
Illumina reads
Forward and reverse Illumina reads for each bacterial line. The sensitive P.syringae DC3000 ancestral line is called DC3ANC and all other 3 letter codes at the start of the filename refer to each of the mutant lines generated in the experiment
Costs of resistance CFU counts
P.syringae colony forming unit counts from homogenized tomato leaf samples. Each 'strain' relates to a selected phage-resistant genotype or the ancestral, phage-sensitive genotype
Partial ITS1 sequence for Amara alpina
Example partial sequence of the internal transcribed spacer 1 (ITS1) for Amara alpin
Partial COI sequence for Amara alpina
Example partial sequence of the cytochrome oxidase subunit 1 (COI) gene for Amara alpin
Contig data for museum-1
FASTA file of all contigs considered during the metagenomic analysis of sample museum-1. Use with 'BLAST assignment data for museum-1' in MEGAN v4.70
BLAST assignment data for ancient-1
Unfiltered BLAST assignment file of contigs identified during the metagenomic analysis of sample ancient-1. Use with 'Contig data for ancient-1' in MEGAN v4.70. See attached readme file for column headers
Partial 28S sequence for Amara alpina
Example partial sequence of the 28S ribosomal RNA (28S) gene for Amara alpin
Contig data for museum-2
FASTA file of all contigs considered during the metagenomic analysis of sample museum-2. Use with 'BLAST assignment data for museum-2' in MEGAN v4.70
BLAST assignment data for modern-2
Unfiltered BLAST assignment file of contigs identified during the metagenomic analysis of sample modern-2. Use with 'Contig data for modern-2' in MEGAN v4.70. See attached readme file for column headers
BLAST assignment data for ancient-2
Unfiltered BLAST assignment file of contigs identified during the metagenomic analysis of sample ancient-2. Use with 'Contig data for ancient-2' in MEGAN v4.70. See attached readme file for column headers
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