A comparative study of peroxisomal structures in Hansenula polymorpha pex mutants

In a recent study, we performed a systematic genome analysis for the conservation of genes involved in peroxisome biogenesis (PEX genes) in various fungi. We have now performed a systematic study of the morphology of peroxisome remnants (‘ghosts’) in Hansenula polymorpha pex mutants (pex1–pex20) and the level of peroxins and matrix proteins in these strains. To this end, all available H. polymorpha pex strains were grown under identical cultivation conditions in glucose-limited chemostat cultures and analyzed in detail. The H. polymorpha pex mutants could be categorized into four distinct groups, namely pex mutants containing: (1) virtually normal peroxisomal structures (pex7, pex17, pex20); (2) small peroxisomal membrane structures with a distinct lumen (pex2, pex4, pex5, pex10, pex12, pex14); (3) multilayered membrane structures lacking apparent matrix protein content (pex1, pex6, pex8, pex13); and (4) no peroxisomal structures (pex3, pex19).

On Witten multiple zeta-functions associated with semisimple Lie algebras IV

In our previous work, we established the theory of multi-variable Witten zeta-functions, which are called the zeta-functions of root systems. We have already considered the cases of types $A_2$, $A_3$, $B_2$, $B_3$ and $C_3$. In this paper, we consider the case of $G_2$-type. We define certain analogues of Bernoulli polynomials of $G_2$-type and study the generating functions of them to determine the coefficients of Witten's volume formulas of $G_2$-type. Next we consider the meromorphic continuation of the zeta-function of $G_2$-type and determine its possible singularities. Finally, by using our previous method, we give explicit functional relations for them which include Witten's volume formulas.Comment: 22 pag

Time and length scales in spin glasses

We discuss the slow, nonequilibrium, dynamics of spin glasses in their glassy phase. We briefly review the present theoretical understanding of the spectacular phenomena observed in experiments and describe new numerical results obtained in the first large-scale simulation of the nonequilibrium dynamics of the three dimensional Heisenberg spin glass.Comment: Paper presented at "Highly Frustrated Magnetism 2003", Grenoble, August 200

Field-Shift Aging Protocol on the 3D Ising Spin-Glass Model: Dynamical Crossover between the Spin-Glass and Paramagnetic States

Spin-glass (SG) states of the 3-dimensional Ising Edwards-Anderson model under a static magnetic field $h$ are examined by means of the standard Monte Carlo simulation on the field-shift aging protocol at temperature $T$. For each process with (T; \tw, h), \tw being the waiting time before the field is switched on, we extract the dynamical crossover time, \tcr(T; \tw, h). We have found a nice scaling relation between the two characteristic length scales which are properly determined from \tcr and \tw and then are normalized by the static field crossover length introduced in the SG droplet theory. This scaling behavior implies the instability of the SG phase in the equilibrium limit even under an infinitesimal $h$. In comparison with this numerical result the field effect on real spin glasses is also discussed.Comment: 4 pages, 5 figures, jpsj2, Changed conten

Real space application of the mean-field description of spin glass dynamics

The out of equilibrium dynamics of finite dimensional spin glasses is considered from a point of view going beyond the standard `mean-field theory' versus `droplet picture' debate of the last decades. The main predictions of both theories concerning the spin glass dynamics are discussed. It is shown, in particular, that predictions originating from mean-field ideas concerning the violations of the fluctuation-dissipation theorem apply quantitatively, provided one properly takes into account the role of the spin glass coherence length which plays a central role in the droplet picture. Dynamics in a uniform magnetic field is also briefly discussed.Comment: 4 pages, 4 eps figures. v2: published versio

Aging dynamics in reentrant ferromagnet: Cu0.2_{0.2}Co0.8_{0.8}Cl2_{2}-FeCl3_{3} graphite bi-intercalation compound

Aging dynamics of a reentrant ferromagnet Cu$_{0.2}$Co$_{0.8}$Cl$_{2}$-FeCl$_{3}$ graphite bi-intercalation compound has been studied using AC and DC magnetic susceptibility. This compound undergoes successive transitions at the transition temperatures $T_{c}$ ($= 9.7$ K) and $T_{RSG}$ ($= 3.5$ K). The relaxation rate $S(t)$ exhibits a characteristic peak at $t_{cr}$ close to a wait time $t_{w}$ below $T_{c}$, indicating that the aging phenomena occur in both the reentrant spin glass (RSG) phase below $T_{RSG}$ and the ferromagnetic (FM) phase between $T_{RSG}$ and $T_{c}$. The relaxation rate $S(t)$ ($=\text{d}\chi_{ZFC}(t)/\text{d}\ln t$) in the FM phase exhibits two peaks around $t_{w}$ and a time much shorter than $t_{w}$ under the positive $T$-shift aging, indicating a partial rejuvenation of domains. The aging state in the FM phase is fragile against a weak magnetic-field perturbation. The time ($t$) dependence of $\chi_{ZFC}(t)$ around $t \approx t_{cr}$ is well approximated by a stretched exponential relaxation: $\chi_{ZFC}(t) \approx \exp[-(t/\tau)^{1-n}]$. The exponent $n$ depends on $t_{w}$, $T$, and $H$. The relaxation time $\tau$ ($\approx t_{cr}$) exhibits a local maximum around 5 K, reflecting a chaotic nature of the FM phase. It drastically increases with decreasing temperature below $T_{RSG}$.Comment: 16 pages,16 figures, submitted to Physical Review

A generalized Macdonald operator

We present an explicit difference operator diagonalized by the Macdonald polynomials associated with an (arbitrary) admissible pair of irreducible reduced crystallographic root systems. By the duality symmetry, this gives rise to an explicit Pieri formula for the Macdonald polynomials in question. The simplest examples of our construction recover Macdonald's celebrated difference operators and associated Pieri formulas pertaining to the minuscule and quasi-minuscule weights. As further by-products, explicit expansions and Littlewood-Richardson type formulas are obtained for the Macdonald polynomials associated with a special class of small weights.Comment: 11 pages. To appear in Int. Math. Res. Not. IMR

Helicon waves and efficient plasma production

Helicon waves generated by radio-frequency (rf) waves are experimentally demonstrated to have the characteristics of Landau damping, as predicted theoretically, and fully ionized plasmas are realized by this efficient coupling of rf powers to plasmas. Excited waves are identified as a helicon wave by measuring wavelengths in the plasma along the magnetic field and comparing with the dispersion relation. Good agreement is found between experimental and theoretical results

Temperature shifts in the Sinai model: static and dynamical effects

We study analytically and numerically the role of temperature shifts in the simplest model where the energy landscape is explicitely hierarchical, namely the Sinai model. This model has both attractive features (there are valleys within valleys in a strict self similar sense), but also one important drawback: there is no phase transition so that the model is, in the large size limit, effectively at zero temperature. We compute various static chaos indicators, that are found to be trivial in the large size limit, but exhibit interesting features for finite sizes. Correspondingly, for finite times, some interesting rejuvenation effects, related to the self similar nature of the potential, are observed. Still, the separation of time scales/length scales with temperatures in this model is much weaker that in experimental spin-glasses.Comment: 19 pages, Revtex4, eps figure