Application of Scanning Electron Microscopy to the Study of Shark Dermal Denticles

Clear, high resolution scanning electron micrographs of shark dermal denticles are essential to allow the study of their morphology and micro-relief. Various techniques were tried to remove mucus and adventitious debris, including KOH, trypsin enzyme, and ultrasonication. In most species examined the best results were obtained with enzyme treatment followed by ultrasonication. For scanning electron microscopic examination it was found that 15 nm gold coating, or more, and 10 kV, or less, had to be employed to reduce charging of the denticles

The Identification and Characterization of Metal Wrappings in Historic Textiles Using Microscopy and Energy Dispersive X-Ray Spectrometry: Problems Associated with Identification and Characterization

Scanning electron microscopy-energy dispersive x-ray spectrometry (SEM-EDS) has been employed for the description of metal wrapped yarns. Although considerable detail is obtainable as microphotographs, and elemental analysis is obtained with ease, caution should be exercised in interpreting results. Several unravelled samples should be examined; light microscopy should be employed prior to SEM-EDS analysis. Examination of eight specimens (six from the textile collection of the Metropolitan Museum of Art, New York; two from private collections) is described. The samples were Chinese (5), German (1), Spanish (1), Turkish (1). Difficulties encountered in describing this set of samples are enumerated

Scanning Electron Microscopy in the Evaluation of Consolidation Treatments for Stone

The use of scanning electron microscopy (SEM) examination is shown to be an important tool in the evaluation of the effectiveness of consolidant treatments in stone. This implies the visualization of the attachment of the resin to the stone, the assessment of the degree of penetration and the distribution of the resin in the stone matrix. These factors can then be correlated with the chemical nature of the stone and the resin. A sample preparation technique for limestone, based on acid etching of the surface, is described. This technique improves the visualization of the resin within the stone

Weighted Silks Observed Using Energy Dispersive X-Ray Spectrometry

A group of modern silk fabrics was treated with various weighting agents as standards. These standards were observed using energy dispersive x-ray spectrometry. The standards were compared to untreated samples and to museum specimens of weighted silks. In all prepared specimens the elements expected from treatment were observed; weighting treatments could be distinguished. The analytical procedures are discussed and compared to recent work on mordant analysis using the same techniques

Elemental and Ultrastructural Characteristics of the Egg Capsules of Nautilus Pompilius

Six pearly nautili (Nautilus pompilius) raised in captivity produced nonviable egg capsules which were examined using scanning electron microscopy ( SE M) and energy dispersive x-ray spectrometry (EDS). Macro and microscopic observations revealed two distinct and separate walls encircling the yolk sac. Both walls exhibited a porous appearance in cross-section. Protein analysis demonstrated the proteinaceous nature of nidimental gland secretions and egg capsule walls. EDS analysis of each wall shows the elemental composition to be identical in both, with each wall containing similar proportions of S, CI, Mg, Na, K, and trace amounts of Ca. X-ray mapping of Na and Cl along each wall surface suggests similar construction of both walls. EDS analysis of the nidimental gland secretions of the adult female nautilus have shown a composition similar to that of the egg capsule

Differential DNA Methylation in Umbilical Cord Blood of Infants Exposed to Low Levels of Arsenic in Utero

Background: There is increasing epidemiologic evidence that arsenic exposure in utero, even at low levels found throughout much of the world, is associated with adverse reproductive outcomes and may contribute to long-term health effects. Animal models, in vitro studies, and human cancer data suggest that arsenic may induce epigenetic alterations, specifically by altering patterns of DNA methylation. Objectives: In this study we aimed to identify differences in DNA methylation in cord blood samples of infants with in utero, low-level arsenic exposure. Methods: DNA methylation of cord-blood derived DNA from 134 infants involved in a prospective birth cohort in New Hampshire was profiled using the Illumina Infinium Methylation450K array. In utero arsenic exposure was estimated using maternal urine samples collected at 24–28 weeks gestation. We used a novel cell mixture deconvolution methodology for examining the association between inferred white blood cell mixtures in infant cord blood and in utero arsenic exposure; we also examined the association between methylation at individual CpG loci and arsenic exposure levels. Results: We found an association between urinary inorganic arsenic concentration and the estimated proportion of CD8+ T lymphocytes (1.18; 95% CI: 0.12, 2.23). Among the top 100 CpG loci with the lowest p-values based on their association with urinary arsenic levels, there was a statistically significant enrichment of these loci in CpG islands (p = 0.009). Of those in CpG islands (n = 44), most (75%) exhibited higher methylation levels in the highest exposed group compared with the lowest exposed group. Also, several CpG loci exhibited a linear dose-dependent relationship between methylation and arsenic exposure. Conclusions: Our findings suggest that in utero exposure to low levels of arsenic may affect the epigenome. Long-term follow-up is planned to determine whether the observed changes are associated with health outcomes

Methylation of Leukocyte DNA and Ovarian Cancer: Relationships with Disease Status and Outcome

Genome-wide interrogation of DNA methylation (DNAm) in blood-derived leukocytes has become feasible with the advent of CpG genotyping arrays. In epithelial ovarian cancer (EOC), one report found substantial DNAm differences between cases and controls; however, many of these disease-associated CpGs were attributed to differences in white blood cell type distributions. We examined blood-based DNAm in 336 EOC cases and 398 controls; we included only high-quality CpG loci that did not show evidence of association with white blood cell type distributions to evaluate association with case status and overall survival

Manageable creativity

This article notes a perception in mainstream management theory and practice that creativity has shifted from being disruptive or destructive to 'manageable'. This concept of manageable creativity in business is reflected in a similar rhetoric in cultural policy, especially towards the creative industries. The article argues that the idea of 'manageable creativity' can be traced back to a 'heroic' and a 'structural' model of creativity. It is argued that the 'heroic' model of creativity is being subsumed within a 'structural' model which emphasises the systems and infrastructure around individual creativity rather than focusing on raw talent and pure content. Yet this structured approach carries problems of its own, in particular a tendency to overlook the unpredictability of creative processes, people and products. Ironically, it may be that some confusion in our policies towards creativity is inevitable, reflecting the paradoxes and transitions which characterise the creative process

Accounting for Diffusion in Agent Based Models of Reaction-Diffusion Systems with Application to Cytoskeletal Diffusion

Diffusion plays a key role in many biochemical reaction systems seen in nature. Scenarios where diffusion behavior is critical can be seen in the cell and subcellular compartments where molecular crowding limits the interaction between particles. We investigate the application of a computational method for modeling the diffusion of molecules and macromolecules in three-dimensional solutions using agent based modeling. This method allows for realistic modeling of a system of particles with different properties such as size, diffusion coefficients, and affinity as well as the environment properties such as viscosity and geometry. Simulations using these movement probabilities yield behavior that mimics natural diffusion. Using this modeling framework, we simulate the effects of molecular crowding on effective diffusion and have validated the results of our model using Langevin dynamics simulations and note that they are in good agreement with previous experimental data. Furthermore, we investigate an extension of this framework where single discrete cells can contain multiple particles of varying size in an effort to highlight errors that can arise from discretization that lead to the unnatural behavior of particles undergoing diffusion. Subsequently, we explore various algorithms that differ in how they handle the movement of multiple particles per cell and suggest an algorithm that properly accommodates multiple particles of various sizes per cell that can replicate the natural behavior of these particles diffusing. Finally, we use the present modeling framework to investigate the effect of structural geometry on the directionality of diffusion in the cell cytoskeleton with the observation that parallel orientation in the structural geometry of actin filaments of filopodia and the branched structure of lamellipodia can give directionality to diffusion at the filopodia-lamellipodia interface

Serial Analysis of the Gut and Respiratory Microbiome in Cystic Fibrosis in Infancy: Interaction between Intestinal and Respiratory Tracts and Impact of Nutritional Exposures

Pulmonary damage caused by chronic colonization of the cystic fibrosis (CF) lung by microbial communities is the proximal cause of respiratory failure. While there has been an effort to document the microbiome of the CF lung in pediatric and adult patients, little is known regarding the developing microflora in infants. We examined the respiratory and intestinal microbiota development in infants with CF from birth to 21 months. Distinct genera dominated in the gut compared to those in the respiratory tract, yet some bacteria overlapped, demonstrating a core microbiota dominated by Veillonella and Streptococcus. Bacterial diversity increased significantly over time, with evidence of more rapidly acquired diversity in the respiratory tract. There was a high degree of concordance between the bacteria that were increasing or decreasing over time in both compartments; in particular, a significant proportion (14/16 genera) increasing in the gut were also increasing in the respiratory tract. For 7 genera, gut colonization presages their appearance in the respiratory tract. Clustering analysis of respiratory samples indicated profiles of bacteria associated with breast-feeding, and for gut samples, introduction of solid foods even after adjustment for the time at which the sample was collected. Furthermore, changes in diet also result in altered respiratory microflora, suggesting a link between nutrition and development of microbial communities in the respiratory tract. Our findings suggest that nutritional factors and gut colonization patterns are determinants of the microbial development of respiratory tract microbiota in infants with CF and present opportunities for early intervention in CF with altered dietary or probiotic strategies