Plant sexual reproduction during climate change: gene function in natura studied by ecological and evolutionary systems biology

Background It is essential to understand and predict the effects of changing environments on plants. This review focuses on the sexual reproduction of plants, as previous studies have suggested that this trait is particularly vulnerable to climate change, and because a number of ecologically and evolutionarily relevant genes have been identified. Scope It is proposed that studying gene functions in naturally fluctuating conditions, or gene functions in natura, is important to predict responses to changing environments. First, we discuss flowering time, an extensively studied example of phenotypic plasticity. The quantitative approaches of ecological and evolutionary systems biology have been used to analyse the expression of a key flowering gene, FLC, of Arabidopsis halleri in naturally fluctuating environments. Modelling showed that FLC acts as a quantitative tracer of the temperature over the preceding 6 weeks. The predictions of this model were verified experimentally, confirming its applicability to future climate changes. Second, the evolution of self-compatibility as exemplifying an evolutionary response is discussed. Evolutionary genomic and functional analyses have indicated that A. thaliana became self-compatible via a loss-of-function mutation in the male specificity gene, SCR/SP11. Self-compatibility evolved during glacial-interglacial cycles, suggesting its association with mate limitation during migration. Although the evolution of self-compatibility may confer short-term advantages, it is predicted to increase the risk of extinction in the long term because loss-of-function mutations are virtually irreversible. Conclusions Recent studies of FLC and SCR have identified gene functions in natura that are unlikely to be found in laboratory experiments. The significance of epigenetic changes and the study of non-model species with next-generation DNA sequencers is also discusse

Electronic and Magnetic Phase Diagram of a Superconductor, SmFeAsO1-xFx

A crystallographic and magnetic phase diagram of SmFeAsO1-xFx is determined as a function of x in terms of temperature based on electrical transport and magnetization, synchrotron powder x-ray diffraction, 57Fe Mossbauer spectra (MS), and 149Sm nuclear resonant forward scattering (NRFS) measurements. MS revealed that the magnetic moments of Fe were aligned antiferromagnetically at ~144 K (TN(Fe)). The magnetic moment of Fe (MFe) is estimated to be 0.34 myuB/Fe at 4.2 K for undoped SmFeAsO; MFe is quenched in superconducting F-doped SmFeAsO. 149Sm NRFS spectra revealed that the magnetic moments of Sm start to order antiferromagnetically at 5.6 K (undoped) and 4.4 K (TN(Sm)) (x = 0.069). Results clearly indicate that the antiferromagnetic Sm sublattice coexists with the superconducting phase in SmFeAsO1-xFx below TN(Sm), while antiferromagnetic Fe sublattice does not coexist with the superconducting phase.Comment: Accepted in New Journal of Physic

E6,7,8 Magnetized Extra Dimensional Models

We study 10D super Yang-Mills theory with the gauge groups $E_6$, $E_7$ and $E_8$. We consider the torus/orbifold compacfitication with magnetic fluxes and Wilson lines. They lead to 4D interesting models with three families of quarks and leptons, whose profiles in extra dimensions are quasi-localized because of magnetic fluxes.Comment: 17 pages, 1 figur

Three-generation Models from E_8 Magnetized Extra Dimensional Theory

We study 10D super Yang-Mills E8 theory on the 6D torus compactification with magnetic fluxes. We study systematically the possibilities for realizing 4D supersymmetric standard models with three generations of quarks and leptons. We also study quark mass matrices.Comment: 30 page

First Detection of Lyman-Alpha Scattering Polarization in Off-limb Spicules and Its Constraint on Their Magnetic Field

No abstract availabl

Contrasting Pressure Effects in Sr2VFeAsO3 and Sr2ScFePO3

We report the resistivity measurements under pressure of two Fe-based superconductors with a thick perovskite oxide layer, Sr2VFeAsO3 and Sr2ScFePO3. The superconducting transition temperature Tc of Sr2VFeAsO3 markedly increases with increasing pressure. Its onset value, which was Tc{onset}=36.4 K at ambient pressure, increases to Tc{onset}=46.0 K at ~4 GPa, ensuring the potential of the "21113" system as a high-Tc material. However, the superconductivity of Sr2ScFePO3 is strongly suppressed under pressure. The Tc{onset} of ~16 K decreases to ~5 K at ~4 GPa, and the zero-resistance state is almost lost. We discuss the factor that induces this contrasting pressure effect.Comment: 5 pages, 4 figures, to be published in J. Phys. Soc. Jpn. No.12 (2009

Direct observation of quasi-particle band in CeIrIn5_5: Angle-resolved photoemission spectroscopy study

We have performed a high-resolution angle resolved Ce 4$d-4f$ resonant photoemission experiment on the heavy fermion superconductor CeIrIn$_5$. We have observed a quasi-particle band which has an energy dispersion of $\sim 30$ meV in the Ce 4$f$ on-resonance spectra. The result suggests that although the 4$f$ spectra are dominated by the localized/correlated character, the small itinerant component is responsible for the superconductivity in this compound.Comment: 5 pages, 3 figure

Transcriptomic responses of oil palm (Elaeis guineensis) stem to waterlogging at plantation in relation to precipitation seasonality

Global warming-induced climate change causes significant agricultural problems by increasing the incidence of drought and flooding events. Waterlogging is an inevitable consequence of these changes but its effects on oil palms have received little attention and are poorly understood. Recent waterlogging studies have focused on oil palm seedlings, with particular emphasis on phenology. However, the transcriptomic waterlogging response of mature oil palms remains elusive in real environments. We therefore investigated transcriptomic changes over time in adult oil palms at plantations over a two-year period with pronounced seasonal variation in precipitation. A significant transcriptional waterlogging response was observed in the oil palm stem core but not in leaf samples when gene expression was correlated with cumulative precipitation over two-day periods. Pathways and processes upregulated or enriched in the stem core response included hypoxia, ethylene signaling, and carbon metabolism. Post-waterlogging recovery in oil palms was found to be associated with responses to heat stress and carotenoid biosynthesis. Nineteen transcription factors (TFs) potentially involved in the waterlogging response of mature oil palms were also identified. These data provide new insights into the transcriptomic responses of planted oil palms to waterlogging and offer valuable guidance on the sensitivity of oil palm plantations to future climate changes

A study of beam ion and deuterium–deuterium fusion-born triton transports due to energetic particle-driven magnetohydrodynamic instability in the large helical device deuterium plasmas

Understanding energetic particle transport due to magnetohydrodynamic instabilities excited by energetic particles is essential to apprehend alpha particle confinement in a fusion burning plasma. In the large helical device (LHD), beam ion and deuterium–deuterium fusion-born triton transport due to resistive interchange mode destabilized by helically-trapped energetic ions (EIC) are studied employing comprehensive neutron diagnostics, such as the neutron flux monitor and a newly developed scintillating fiber detector characterized by high detection efficiency. Beam ion transport due to EIC is studied in deuterium plasmas with full deuterium or hydrogen/deuterium beam injections. The total neutron emission rate (Sn) measurement indicates that EIC induces about a 6% loss of passing transit beam ions and a 60% loss of helically-trapped ions. The loss rate of helically-trapped ions, which drive EIC, is larger than the loss rate of passing transit beam ions. Furthermore, the drop of Sn increasing linearly with the EIC amplitude shows that barely confined beam ions existing near the confinement-loss boundary are lost due to EIC. In full deuterium conditions, a study of deuterium–deuterium fusion-born triton transport due to EIC is performed by time-resolved measurement of total secondary deuterium–tritium neutron emission rate (Sn_DT). Drop of Sn_DT increases substantially with EIC amplitude to the third power and reaches up to 30%. The relation shows that not only tritons confined in confined-loss boundary, but also tritons confined in the inner region of a plasma, are substantially transported