Hydrodynamic collective effects of active proteins in biological membranes

Lipid bilayers forming biological membranes are known to behave as viscous 2D fluids on submicrometer scales; usually they contain a large number of active protein inclusions. Recently, it has been shown [Proc. Nat. Acad. Sci. USA 112, E3639 (2015)] that such active proteins should in- duce non-thermal fluctuating lipid flows leading to diffusion enhancement and chemotaxis-like drift for passive inclusions in biomembranes. Here, a detailed analytical and numerical investigation of such effects is performed. The attention is focused on the situations when proteins are concentrated within lipid rafts. We demonstrate that passive particles tend to become attracted by active rafts and are accumulated inside them.Comment: 12 pages, 7 figure

Slowing and stopping of chemical waves in a narrowing canal

The propagation of a chemical wave in a narrow, cone-shaped glass capillary was investigated. When a chemical wave propagates from the wider end to the narrower end, it slows, stops, and then disappears. A phenomenological model that considers the surface effect of the glass is proposed, and this model reproduces the experimental trends.Comment: 8 pages, 5 figure

Anomalous diffusion and transport by a reciprocal convective flow

Under low-Reynolds-number conditions, dynamics of convection and diffusion are usually considered separately because their dominant spatial and temporal scales are different, but cooperative effects of convection and diffusion can cause diffusion enhancement [Koyano et al., Phys. Rev. E, 102, 033109 (2020)]. In this study, such cooperative effects are investigated in detail. Numerical simulations based on the convection-diffusion equation revealed that anisotropic diffusion and net shift as well as diffusion enhancement occur under a reciprocal flow. Such anomalous diffusion and transport are theoretically derived by the analyses of the Langevin dynamics.Comment: 10 pages, 9 figure

Mode Selection in the Spontaneous Motion of an Alcohol Droplet

An alcohol (pentanol) droplet exhibits spontaneous agitation on an aqueous solution, driven by a solutal Marangoni effect. We found that the droplet's mode of motion is controlled by its volume. A droplet with a volume of less than $0.1 \mu\rm{l}$ shows irregular translational motion, whereas intermediate-sized droplets of $0.1-200 \mu\rm{l}$ show vectorial motion. When the volume is above $300 \mu\rm{l}$, the droplet splits into smaller drops. These experimental results regarding mode selection are interpreted in terms of the wave number selection depending on the droplet volume.Comment: 4 pages, 5 figure

Reaction-induced molecular dancing and boosted diffusion of enzymes

A novel mechanism of reaction-induced active molecular motion, not involving any kind of self-propulsion, is proposed and analyzed. Because of the momentum exchange with the surrounding solvent, conformational transitions in mechano-chemical enzymes are accompanied by motions of their centers of mass. As we show, in combination with rotational diffusion, such repeated reciprocal motions generate an additional random walk - or molecular dancing - and hence boost translational diffusion of an enzyme. A systematic theory of this phenomenon is developed, using as an example a simple enzyme model of a rigid two-state dumbbell. To support the analysis, numerical simulations are performed. Our conclusion is that the phenomenon of molecular dancing could underlie the observations of reaction-induced diffusion enhancement in enzymes. Major experimental findings, such as the occurrence of leaps, the anti-chemotaxis, the linear dependence on the reaction turnover rate and on the rate of energy supply, become thus explained. Moreover, the dancing behavior is possible in other systems, natural and synthetic, too. In the future, interesting biotechnology applications may be developed using such effects.Comment: 19 pages, 6 figure