stand_mort

This file contains the simulation or stand level mortality. It also has the average light level for each of the 62 gap simulations in this study (PARavg)

tree_mort

This file contains tree level mortality (mgp). This file can be used to calculate the mortality data in the other two files

Appendix A. Bibliography of published ecological studies reviewed to produce Fig. 1.

Bibliography of published ecological studies reviewed to produce Fig. 1

Initials_HBDc_SI

Initials (starting) values for third MCMC chain, to be used with the OpenBUGS / JAGS model code (ModelCode_HBD_SI.txt)

Dataset2b_SI

Dataset2b_SI.txt is very similar to Dataset2b_HBD.txt and contains various constants, sample size information, and treatment codes required to run the HBL model. See Dataset2b_HBD.txt description for additional details

Dataset2a_HBD

Dataset2a_HBD contains the integer identifiers for date, vegetation type, and plot associated with each chamber session; dateID, vegID, and PlotID are the same as Datecode, Veg, and Plot in Dataset1_HBD, but each row in Dataset2a_HBD corresponds to the chamber session ID (i.e., Group in Dataset1_HBD)

Initials_HBDa_SI

Initials (starting) values for first MCMC chain, to be used with the OpenBUGS / JAGS model code (ModelCode_HBD_SI.txt)

Appendix A. A table of mean soil and water characteristic parameter values based on measured soil texture for soils collected under Larrea tridentata plants.

A table of mean soil and water characteristic parameter values based on measured soil texture for soils collected under Larrea tridentata plants

Dataset1_HBD

Dataset1_HBD contains individual observations of CO2 and time, along with categorical or integer identifiers for day, vegetation type, plot, session (group). DayN = day since 1/1/2006; Datecode = unique integer ID for each measurement date; Min = minutes after chamber closure; Veg = vegetation treatment ID (1 = vegetated; 2 = herbicide); Plot = plot ID; Group = chamber session ID; CorrCO2 = corrected CO2 concentration (ppm); SoilT = soil temperature (celcius) in/near temperature in surface layer

Dataset2b_HBD

Dataset2b_HBD contains various constants and sample size information required for the the HBD (hierarchical Bayesian diffusion model). This includes Tmtcode, which is a list of 30 values giving the treatment ID associated with each of the 30 plots (ordered by plot #), where 1 = ct, 2 = cT, 3 = Ct, 4 = CT, 5 = ctd, and 6 = cts, for c = ambient CO2, C = elevated CO2, t = ambient temperature, T= warmed, d = deep irritation, and s = shallow irrigation. This dataset also contains Ctrt, denoting the CO2 treatment level associated with each of the 6 treatments; 1 = ambient CO2 and 2 = elevated CO2