30 research outputs found

    Selkoe_etal_Hawaii_genetics_dataset_5.8.14_suppl

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    Sheet 1: Table of life history characteristics and metrics of genetic diversity and structure for 37 Hawaii reef species. Sheet 2: List of publications associated with genetic data for each species. Sheet 3: Input file used to run a redundancy analysis (RDA) on the data. Sheet 4: Table S1. Sheet 5: Table S2. Sheet 6: Fig. S

    RDA_in_revised

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    R code used to run the redundancy analysis (RDA) using the input file in the companion excel file sheet 3

    Panulirus interruptus COI Sequence Alignment

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    This is an alignment of all of the cytochrome c oxidase subunit I (COI) mitochondrial DNA sequence data used in this study. There are a total of 931 sequences, each of which are 494 base pairs in length. The protein translation starts at base pair #1

    Panulirus interruptus Sample Site GPS Points

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    This is an Excel file containing Latitude and Longitude in decimal degrees for each of the sample collection sites in this study. The first column lists the sites from North to South, the second column lists the site abbreviations, the third column lists the latitude in decimal degrees North, and the fourth column lists the longitude in decimal degrees West (negative)

    ToBoLab Hawaii reef genetic data files Arlequin format

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    Each file is named with the first three letters of the genus and species names followed by a two letter marker abbreviation, the number of loci when more than one, and the last name of the original data owner. In each file, island sampling locations are indicated by the first four letters of the island name. For files using a HaplotypeDefinition List, formatting changes to this section may be needed to successfully load into Arlequin. Use PGDSpider software to reformat files to a different input format. Please contact data owners before use of these datasets to obtain detailed information about sampling and study design for proper interpretation of findings. See Appendix in the Supplementary materials of the study for full names and addresses of data owner

    Panulirus interruptus Microsatellite Genotypes

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    This file lists the microsatellite genotypes for each individual scored for the study. Column A is the sample name, consisting of a site abbreviation, and the numbered individual for that site. Column B is the site where the specimen was collected. Columns C-I are the alleles for each of the seven microsatellite markers for that individual. The alleles are presented as the size of the alle, not the number of base pair repeats. The two alleles for each marker are listed in two rows for each individual

    Summary statistics and ancillary data of published single driver-response relationships in pelagic marine ecosystems

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    We created a database of published single driver-response relationships in marine pelagic ecosystems that were deemed significant based on p values ≤ 0.05 or were included in best-fit models identified through model selection. Multiple summary statistics were recorded (when available) in the database in an effort to explore variation in driver-response relationships in the present study and to be made available for researchers for future studies. The summary statistics include published or derived shapes of the relationships (linear, non-linear or specific functional forms), sample size, quantitative estimates of ecological thresholds, p values, R^2, deviance explained, correlation and regression coefficients, and model covariates (if multivariate model). In addition, we collected ancillary data on study characteristics to explore the variation in driver-response relationships and to identify the most robust papers with respect to statistical methods. The ancillary data in our database include ecosystem type (enclosed bay or sea, coastal pelagic, continental shelf and continental slope/oceanic), local region, ocean basin, large marine ecosystem, temporal scale of study, functional level (i.e., individual, population, community) and species trophic level (TL 1-4) of ecological response, primary productivity (mgC/mg2/day) and the statistical methods used by the authors. Estimates of species trophic level and primary productivity were obtained from the Sea Around Us Project (http://www.seaaroundus.org/). See Supplement Table S1 for additional description of data columns. The references in the database are cross-referenced with Table S1 Literature Cited.docx
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