zsteinmetz/envalysis: envalysis v0.6.0+cran

New Features Inverse predict concentrations from calibration curves using inv_predict() as.list() method for class 'calibration' pkgdown documentation Minor Improvements Code coverage GitHub Actions for macOS Don't export mselect() fork anymore; use drc::mselect() instea

Fusarium Mycotoxins in Maize Field Soils: Method Validation and Implications for Sampling Strategy

While mycotoxins are generally regarded as food contamination issues, there is growing interest in mycotoxins as environmental pollutants. The main sources of trichothecene and zearalenone mycotoxins in the environment are mainly attributed to Fusarium infested fields, where mycotoxins can wash off in infested plants or harvest residues. Subsequently, mycotoxins inevitably enter the soil. In this context, investigations into the effects, fate, and transport are still needed. However, there is a lack of analytical methods used to determine Fusarium toxins in soil matrices. We aimed to validate an analytical method capable of determining the toxins nivalenol (NIV), deoxynivalenol (DON), 15-acetyl-deoxynivalenol (15-AcDON), and zearalenone (ZEN), at environmentally relevant concentrations, in five contrasting agricultural soils. Soils were spiked at three levels (3, 9 and 15 ng g−1), extracted by solid-liquid extraction assisted with ultrasonication, using a generic solvent composition of acetonitrile:water 84:16 (v:v) and measured by LC–HRMS. Method validation was successful for NIV, DON, and 15-AcDON with mean recoveries > 93% and RSDr < 10%. ZEN failed the validation criteria. The validated method was applied to eight conventionally managed maize field soils during harvest season, to provide a first insight into DON, NIV, and 15-AcDON levels. Mycotoxins were present in two out of eight sampled maize fields. Soil mycotoxin concentrations ranged from 0.53 to 19.4 ng g−1 and 0.8 to 2.2 ng g−1 for DON and NIV, respectively. Additionally, we found indication that “hot-spot” concentrations were restricted to small scales (<5 cm) with implications for field scale soil monitoring strategies

The importance of diet-related effects of the antibiotic ciprofloxacin on the leaf-shredding invertebrate Gammarus fossarum (Crustacea; Amphipoda)

Antibiotics may constitute a risk for aquatic detritivorous macroinvertebrates (i.e., shredders) via waterborne and dietary antibiotic exposure. In addition, antibiotics can alter the food quality for shredders mediated by shifts in leaf-associated decomposer (i.e., aquatic fungi and bacteria) communities. However, little is known about the relative importance of the waterborne and dietary effect pathway. Therefore, we followed a tiered testing approach aimed at assessing the relative importance of these effect pathways. We employed the antibiotic ciprofloxacin (CIP) and the shredder Gammarus fossarum as model stressor and test species, respectively. In a first step, we assessed the short-term waterborne toxicity of CIP using survival and leaf consumption of G. fossarum as response variables. Alterations in the leaf-associated decomposer community, which may be reflected by their palatability, were assessed using food choice assays. Finally, we conducted a 2 x 2-factorial experiment over 24 days assessing the pathways individually and combined using energy processing (i.e., leaf consumption and feces production), growth and energy storage (i.e., neutral lipid fatty acids) as variables. Short term waterborne exposure indicated low toxicity with LC50 and EC50 values of 13.6 and 6.4 mg CIP/L, respectively. At the same time, shredders did not prefer any leaf material during the food choice assay. However, the fungal community was significantly affected in the highest CIP-treatments (0.5 and 2.5 mg/L) suggesting an altered food quality for shredders. This assumption is supported by the results of the long-term assay. At 0.5 mg CIP/L, gammarids' leaf consumption, growth and energy storage were increased when subjected via the dietary pathway, which was linked to changes in the leaf-associated microbial community. Our data highlight the importance of dietary effect pathways for effects on shredders, potentially impacting energy dynamics in detritus-based stream ecosystems

Data from: Fractionation of copper and uranium in organic and conventional vineyard soils and adjacent stream sediments studied by sequential extraction

This collection contains data and R code to reproduce the findings published in the following article:<br><br><div> <div>Steinmetz Z, Kenngott KGJ, Azeroual M, Schäfer RB, Schaumann GE (2017) Fractionation of copper and uranium in organic and conventional vineyard soils and adjacent stream sediments studied by sequential extraction. J Soils Sediments. doi: 10.1007/s11368-016-1623-y<br><br></div></div>For further details, please read the README file.<br