Improved flood mapping for efficient policy design by fusion of Sentinel-1, Sentinel-2, and Landsat-9 imagery to identify population and infrastructure exposed to floods

A reliable yet inexpensive tool for the estimation of flood water spread is conducive for efficient disaster management. The application of optical and SAR imagery in tandem provides a means of extended availability and enhanced reliability of flood mapping. We propose a methodology to merge these two types of imagery into a common data space and demonstrate its use in the identification of affected populations and infrastructure for the 2022 floods in Pakistan. The merging of optical and SAR data provides us with improved observations in cloud-prone regions; that is then used to gain additional insights into flood mapping applications. The use of open source datasets from WorldPop and OSM for population and roads respectively makes the exercise globally replicable. The integration of flood maps with spatial data on population and infrastructure facilitates informed policy design. We have shown that within the top five flood-affected districts in Sindh province, Pakistan, the affected population accounts for 31 %, while the length of affected roads measures 1410.25 km out of a total of 7537.96 km.Comment: IEEE IGARSS 202

Novel VPS13B Mutations in Three Large Pakistani Cohen Syndrome Families Suggests a Baloch Variant with Autistic-Like Features.

BackgroundCohen Syndrome (COH1) is a rare autosomal recessive disorder, principally identified by ocular, neural and muscular deficits. We identified three large consanguineous Pakistani families with intellectual disability and in some cases with autistic traits.MethodsClinical assessments were performed in order to allow comparison of clinical features with other VPS13B mutations. Homozygosity mapping followed by whole exome sequencing and Sanger sequencing strategies were used to identify disease-related mutations.ResultsWe identified two novel homozygous deletion mutations in VPS13B, firstly a 1 bp deletion, NM_017890.4:c.6879delT; p.Phe2293Leufs*24, and secondly a deletion of exons 37-40, which co-segregate with affected status. In addition to COH1-related traits, autistic features were reported in a number of family members, contrasting with the "friendly" demeanour often associated with COH1. The c.6879delT mutation is present in two families from different regions of the country, but both from the Baloch sub-ethnic group, and with a shared haplotype, indicating a founder effect among the Baloch population.ConclusionWe suspect that the c.6879delT mutation may be a common cause of COH1 and similar phenotypes among the Baloch population. Additionally, most of the individuals with the c.6879delT mutation in these two families also present with autistic like traits, and suggests that this variant may lead to a distinct autistic-like COH1 subgroup

First Report on the Bioremediation of Textile Industrial Effluents by Piptoporus Betulinus IEBL-3 by Using Response Surface Methodology

The current study was performed to optimize three different industrial textile effluent biodegradation potentials of a brown rot fungus, Piptoporus betulinus IEBL-3, to reduce environmental pollution. The Response Surface Methodology under the Box Bhenken Design was used for the optimization steps. Three ligninolytic enzymes named lignin peroxidase, manganese peroxidase and laccase were also studied during the biodegradation process. The biodegradation rate of the 3 industrial effluents varied between 67 and 76% at the initially optimized conditions. There was a 10%, 7% and 9% increase in the biodegradation of Mujahid textile (MT), Five Star textile (FST) and Sitara textile (ST) effluent, respectively, after the addition of various additional carbon and nitrogen sources in different ratios. The biological treatment decreases the Biological Oxygen Demand and Chemical Oxygen Demand values of the effluents well below the WHO-recommended values for the industrial effluents. The HPLC monitoring of the effluent’s biodegradation showed the appearance of new peaks, some of which may correspond to secondary amines. Study of ligninolytic enzymes during the biodegradation process confirmed their role in the biodegradation process, with lignin peroxidase having highest activity among the others. These findings suggest that P. betulinus is a potential fungus for the biodegradation of the dyes and effluents and can be a suitable candidate for this process

Identification of Lead Compounds against Scm (fms10) in Enterococcus faecium Using Computer Aided Drug Designing

(1) Background: Enterococcus faecium DO is an environmental microbe, which is a mesophilic, facultative, Gram-positive, and multiple habitat microorganism. Enterococcus faecium DO is responsible for many diseases in human. The fight against infectious diseases is confronted by the development of multiple drug resistance in E. faecium. The focus of this research work is to identify a novel compound against this pathogen by using bioinformatics tools and technology. (2) Methods: We screened the proteome (accession No. PRJNA55353) information from the genome database of the National Centre for Biotechnology Information (NCBI) and suggested a potential drug target. I-TASSER was used to predict the three-dimensional structure of the protein, and the structure was optimized and minimized by different tools. PubChem and ChEBI were used to retrieve the inhibitors. Pharmacophore modeling and virtual screening were performed to identify novel compounds. Binding interactions of compounds with target protein were checked using LigPlot. pkCSM, SwissADME, and ProTox-II were used for adsorption, distribution, metabolism, excretion, and toxicity (ADMET) properties. (3) Results: Novel selected compounds have improved absorption and have better ADMET properties. Based on our results, the chemically identified inhibitor ZINC48942 targeted the receptor that can inhibit the activity of infection in E. faecium. This research work will be beneficial for the scientific community and could aid in the design of a new drug against E. faecium infections. (4) Conclusions: It was observed that novel compounds are potential inhibitors with more efficacy and fewer side effects. This research work will help researchers in testing and identification of these chemicals useful against E. faecium

Identification of Lead Compounds against Scm (fms10) in <i>Enterococcus faecium</i> Using Computer Aided Drug Designing

(1) Background: Enterococcus faecium DO is an environmental microbe, which is a mesophilic, facultative, Gram-positive, and multiple habitat microorganism. Enterococcus faecium DO is responsible for many diseases in human. The fight against infectious diseases is confronted by the development of multiple drug resistance in E. faecium. The focus of this research work is to identify a novel compound against this pathogen by using bioinformatics tools and technology. (2) Methods: We screened the proteome (accession No. PRJNA55353) information from the genome database of the National Centre for Biotechnology Information (NCBI) and suggested a potential drug target. I-TASSER was used to predict the three-dimensional structure of the protein, and the structure was optimized and minimized by different tools. PubChem and ChEBI were used to retrieve the inhibitors. Pharmacophore modeling and virtual screening were performed to identify novel compounds. Binding interactions of compounds with target protein were checked using LigPlot. pkCSM, SwissADME, and ProTox-II were used for adsorption, distribution, metabolism, excretion, and toxicity (ADMET) properties. (3) Results: Novel selected compounds have improved absorption and have better ADMET properties. Based on our results, the chemically identified inhibitor ZINC48942 targeted the receptor that can inhibit the activity of infection in E. faecium. This research work will be beneficial for the scientific community and could aid in the design of a new drug against E. faecium infections. (4) Conclusions: It was observed that novel compounds are potential inhibitors with more efficacy and fewer side effects. This research work will help researchers in testing and identification of these chemicals useful against E. faecium.</i

Inclusivity checklist.

PLOS inclusivity in global research checklist. (DOCX)</p

Intracluster correlation coefficients (ICC) and coefficients of variation (k).

Intracluster correlation coefficients (ICC) and coefficients of variation (k).</p

Household characteristics at baseline.

Pakistan has among the highest rates of maternal, perinatal, and neonatal mortality globally. Many of these deaths are potentially preventable with low-cost, scalable interventions delivered through community-based health worker programs to the most remote communities. We conducted a cross-sectional survey of 10,264 households during the baseline phase of a cluster randomized controlled trial (cRCT) in Gilgit-Baltistan, Pakistan from June–August 2021. The survey was conducted through a stratified, two-stage sampling design with the objective of estimating the neonatal mortality rate (NMR) within the study catchment area, and informing implementation of the cRCT. Study outcomes were self-reported and included neonatal death, stillbirth, health facility delivery, maternal death, postpartum hemorrhage (PPH), and Lady Health Worker (LHW) coverage. Summary statistics (proportions and rates) were weighted according to the sampling design, and mixed-effects Poisson regression was conducted to explore the relationship between LHW coverage and maternal/newborn outcomes. We identified 7,600 women who gave birth in the past five years, among whom 13% reported experiencing PPH. The maternal mortality ratio was 225 maternal deaths per 100,000 live births (95% confidence interval [CI] 137–369). Among 12,376 total births, the stillbirth rate was 41.4 per 1,000 births (95% CI 36.8–46.7) and the perinatal mortality rate was 53.0 per 1,000 births (95% CI 47.6–59.0). Among 11,863 live births, NMR was 16.2 per 1,000 live births (95% CI 13.6–19.3) and 65% were delivered at a health facility. LHW home visits were associated with declines in PPH (risk ratio [RR] 0.89 per each additional visit, 95% CI 0.83–0.96) and late neonatal mortality (RR 0.80, 95% CI 0.67–0.97). Intracluster correlation coefficients were also estimated to inform the planning of future trials. The high rates of maternal, perinatal, and neonatal death in Gilgit-Baltistan continue to fall behind targets of the 2030 Sustainable Development Goals.</div