Spatial distribution of Alitta virens and Clymenella torquata with respect to rigid boundaries in mud and sand

Recent advances in understanding of sediment material properties and of burrowing mechanics suggest likely differences in the behavior of organisms burrowing in mud and sand. The path of least resistance in the mud may lead an infaunal organism to burrow along a rigid wall. By contrast, in sand, force chains may prevent a burrowing organism from reaching a rigid wall. Burrowing in mud occurs primarily by the propagation of cracks. Cracks, and hence burrows, tend to propagate along rigid walls. In sand, force chains comprise collections of particles that experience much more stress than their neighbors. Stress chains tend to terminate at walls where their high density may inhibit burrowing. To test for differing effects of mud and sand on the spatial distribution of infauna, proximity to a rigid wall of two polychaetes, Alitta virens and Clymenella torquata, was measured in sand and mud. For both species the cumulative density distribution of burrow distances from the wall showed significantly more burrows near the wall than expected in both mud and sand. However, in direct sampling experiments, the more mobile A. virens showed a greater tendency to burrow at the wall in mud than in sand and strong exclusion from the immediate vicinity of the wall in sand, whereas C. torquata did not show a significant difference in distance from the wall in sand versus mud. The wall effect may be weaker for C. torquata because its limited mobility makes it less likely to encounter a wall over the course of an experiment. Our results point to the need for quantitative assessment of biases of analytical devices that rely on rigid walls, such as optodes and sediment profile imaging cameras, and suggest a possible similar bias in animal distributions around natural analogs such as rock-sediment boundaries

Model-assisted measurements of suspension-feeding flow velocities

Author Posting. © Company of Biologists, 2017. This article is posted here by permission of Company of Biologists for personal use, not for redistribution. The definitive version was published in Journal of Experimental Biology 220 (2017): 2096-2107, doi:10.1242/jeb.147934.Benthic marine suspension feeders provide an important link between benthic and pelagic ecosystems. The strength of this link is determined by suspension-feeding rates. Many studies have measured suspension-feeding rates using indirect clearance-rate methods, which are based on the depletion of suspended particles. Direct methods that measure the flow of water itself are less common, but they can be more broadly applied because, unlike indirect methods, direct methods are not affected by properties of the cleared particles. We present pumping rates for three species of suspension feeders, the clams Mya arenaria and Mercenaria mercenaria and the tunicate Ciona intestinalis, measured using a direct method based on particle image velocimetry (PIV). Past uses of PIV in suspension-feeding studies have been limited by strong laser reflections that interfere with velocity measurements proximate to the siphon. We used a new approach based on fitting PIV-based velocity profile measurements to theoretical profiles from computational fluid dynamic (CFD) models, which allowed us to calculate inhalant siphon Reynolds numbers (Re). We used these inhalant Re and measurements of siphon diameters to calculate exhalant Re, pumping rates, and mean inlet and outlet velocities. For the three species studied, inhalant Re ranged from 8 to 520, and exhalant Re ranged from 15 to 1073. Volumetric pumping rates ranged from 1.7 to 7.4 l h−1 for M. arenaria, 0.3 to 3.6 l h−1 for M. mercenaria and 0.07 to 0.97 l h−1 for C. intestinalis. We also used CFD models based on measured pumping rates to calculate capture regions, which reveal the spatial extent of pumped water. Combining PIV data with CFD models may be a valuable approach for future suspension-feeding studies.This research is part of a collaborative project (National Science Foundation grant OCE-1260232 to P.A.J., and grant OCE-1260199 to J. Crimaldi, University of Colorado). Funding was also provided by NSF grant OIA-1355457 to Maine EPSCoR at the University of Maine (D.C.B.).2018-05-3

Model-assisted measurements of suspension-feeding flow velocities

Benthic marine suspension feeders provide an important link between benthic and pelagic ecosystems. The strength of this link is determined by suspension-feeding rates. Many studies have measured suspension-feeding rates using indirect clearance-rate methods, which are based on the depletion of suspended particles. Direct methods that measure the flow of water itself are less common, but they can be more broadly applied because, unlike indirect methods, direct methods are not affected by properties of the cleared particles. We present pumping rates for three species of suspension feeders, the clams Mya arenaria and Mercenaria mercenaria and the tunicate Ciona intestinalis, measured using a direct method based on particle image velocimetry (PIV). Past uses of PIV in suspension-feeding studies have been limited by strong laser reflections that interfere with velocity measurements proximate to the siphon. We used a new approach based on fitting PIV-based velocity profile measurements to theoretical profiles from computational fluid dynamic (CFD) models, which allowed us to calculate inhalant siphon Reynolds numbers (Re). We used these inhalant Re and measurements of siphon diameters to calculate exhalant Re, pumping rates, and mean inlet and outlet velocities. For the three species studied, inhalant Re ranged from 8−520, and exhalant Re ranged from 15−1073. Volumetric pumping rates ranged from 1.7−7.4 l h−1 for Mya, 0.3−3.6 l h−1 for Mercenaria, and 0.07−0.97 l h−1 for Ciona. We also used CFD models based on measured pumping rates to calculate capture regions, which reveal the spatial extent of pumped water. Combining PIV data with CFD models may be a valuable approach for future suspension-feeding studies

The role of suction thrust in the metachronal paddles of swimming invertebrates

© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Colin, S. P., Costello, J. H., Sutherland, K. R., Gemmell, B. J., Dabiri, J. O., & Du Clos, K. T. The role of suction thrust in the metachronal paddles of swimming invertebrates. Scientific Reports, 10(1), (2020): 17790, doi:10.1038/s41598-020-74745-y.An abundance of swimming animals have converged upon a common swimming strategy using multiple propulsors coordinated as metachronal waves. The shared kinematics suggest that even morphologically and systematically diverse animals use similar fluid dynamic relationships to generate swimming thrust. We quantified the kinematics and hydrodynamics of a diverse group of small swimming animals who use multiple propulsors, e.g. limbs or ctenes, which move with antiplectic metachronal waves to generate thrust. Here we show that even at these relatively small scales the bending movements of limbs and ctenes conform to the patterns observed for much larger swimming animals. We show that, like other swimming animals, the propulsors of these metachronal swimmers rely on generating negative pressure along their surfaces to generate forward thrust (i.e., suction thrust). Relying on negative pressure, as opposed to high pushing pressure, facilitates metachronal waves and enables these swimmers to exploit readily produced hydrodynamic structures. Understanding the role of negative pressure fields in metachronal swimmers may provide clues about the hydrodynamic traits shared by swimming and flying animals.This work was funded by National Science Foundation (NSF OCE 1829913 to SPC), the Alfred P. Sloan Foundation (to BJG) and the Gordon and Betty Moore Foundation (8835 to KRS). The work was also supported by the Roger Williams Foundation to Promote Scholarship and Teaching

Does the settling column method underestimate phytoplankton sinking speeds?

Phytoplankton sinking is a major component of vertical ocean carbon and nutrient fluxes, and sinking is an integral component of phytoplankton biology and ecology. Much of our understanding of phytoplankton sinking derives from the settling column method (SETCOL) in which sinking speeds are calculated from the proportion of cells reaching the bottom of a water-filled column after a set time. Video-based methods are a recent alternative to SETCOL in which sinking speeds are measured by tracking the movement of individual cells in a salinity-stratified water column. In this study, we present the results of a meta-analysis showing that SETCOL produces significantly and consistently lower sinking speeds than the video method. Next, we perform a particle image velocimetry analysis, which shows that the observed discrepancy in sinking speeds between the two methods can probably be explained by weak convection currents in the SETCOLs. Finally, we discuss the implications of these results for the interpretation of past and future phytoplankton sinking speed measurements and models that rely on those measurements

Video S1 from Overcoming hydrodynamic challenges in suspension feeding by juvenile <i>Mya arenaria</i> clams.

A video showing the inhalant and exhalant flows produced by a juvenile <i>Mya arenaria</i> clam. The image plane transects both inhalant (top) and exhalant siphon velocity fields, and the animal's ventral side faces the top of the frame

Figure S1 from Overcoming hydrodynamic challenges in suspension feeding by juvenile <i>Mya arenaria</i> clams.

Exhalant velocities plotted against distance from the center of the exhalant siphon outlet. Each line represents a single, manually-tracked particle. Results are from one video sequence (200 frames)

Fish can use coordinated fin motions to recapture their own vortex wake energy

During swimming, many fishes use pectoral fins for propulsion and, in the process, move substantial amounts of water rearward. However, the effect that this upstream wake has on the caudal fin remains largely unexplored. By coordinating motions of the caudal fin with the pectoral fins, fishes have the potential to create constructive flow interactions which may act to partially recapture the upstream energy lost in the pectoral fin wake. Using experimentally derived velocity and pressure fields for the silver mojarra (Eucinostomus argenteus), we show that pectoral–caudal fin (PCF) coordination enables the circulation and interception of pectoral fin wake vortices by the caudal fin. This acts to transfer energy to the caudal fin and enhance its hydrodynamic efficiency at swimming speeds where this behaviour occurs. We also find that mojarras commonly use PCF coordination in nature. The results offer new insights into the evolutionary drivers and behavioural plasticity of fish swimming as well as for developing more capable bioinspired underwater vehicles

Anguilliform Locomotion across a Natural Range of Swimming Speeds

Eel-like fish can exhibit efficient swimming with comparatively low metabolic cost by utilizing sub-ambient pressure areas in the trough of body waves to generate thrust, effectively pulling themselves through the surrounding water. While this is understood at the fish’s preferred swimming speed, little is known about the mechanism over a full range of natural swimming speeds. We compared the swimming kinematics, hydrodynamics, and metabolic activity of juvenile coral catfish (Plotosus lineatus) across relative swimming speeds spanning two orders of magnitude from 0.2 to 2.0 body lengths (BL) per second. We used experimentally derived velocity fields to compute pressure fields and components of thrust along the body. At low speeds, thrust was primarily generated through positive pressure pushing forces. In contrast, increasing swimming speeds caused a shift in the recruitment of push and pull propulsive forces whereby sub-ambient pressure gradients contributed up to 87% of the total thrust produced during one tail-beat cycle past 0.5 BL s−1. This shift in thrust production corresponded to a sharp decline in the overall cost of transport and suggests that pull-dominated thrust in anguilliform swimmers is subject to a minimum threshold below which drag-based mechanisms are less effective

The most efficient metazoan swimmer creates a \u27virtual wall\u27 to enhance performance

It has been well documented that animals (and machines) swimming or flying near a solid boundary get a boost in performance. This ground effect is often modelled as an interaction between a mirrored pair of vortices represented by a true vortex and an opposite sign \u27virtual vortex\u27 on the other side of the wall. However, most animals do not swim near solid surfaces and thus near body vortex-vortex interactions in open-water swimmers have been poorly investigated. In this study, we examine the most energetically efficient metazoan swimmer known to date, the jellyfish Aurelia aurita, to elucidate the role that vortex interactions can play in animals that swim away from solid boundaries. We used high-speed video tracking, laser-based digital particle image velocimetry (dPIV) and an algorithm for extracting pressure fields from flow velocity vectors to quantify swimming performance and the effect of near body vortex-vortex interactions. Here, we show that a vortex ring (stopping vortex), created underneath the animal during the previous swim cycle, is critical for increasing propulsive performance. This well-positioned stopping vortex acts in the same way as a virtual vortex during wall-effect performance enhancement, by helping converge fluid at the underside of the propulsive surface and generating significantly higher pressures which result in greater thrust. These findings advocate that jellyfish can generate a wall-effect boost in open water by creating what amounts to a \u27virtual wall\u27 between two real, opposite sign vortex rings. This explains the significant propulsive advantage jellyfish possess over other metazoans and represents important implications for bio-engineered propulsion systems