Genotype and phenotype file

Genotype and phenotype information for the non-transgenic and transgenic coho salmon used in the study. This file consists of 4 sheets: 1) phenotype info for non-transgenic siblings with genotype for loci polymorphic in the father ("1.NTsib_FatherPolymorphic"), 2) phenotype info for non-transgenic siblings with genotype for loci polymorphic in the mother ("2.NTsib_MotherPolymorphic"), 3) phenotype info for transgenic siblings with genotype for loci polymorphic in the father ("3.TGsib_FatherPolymorphic"), 4) phenotype info for transgenic siblings with genotype for loci polymorphic in the mother ("4.TGsib_MotherPolymorphic")

Code to correct phenotypes and genotypes for confounding factors

This is the R script that was used to correct the phenotypes and imputed genotypes for possible confounding factors prior to conducting Random Forest analyse

Phenotype comparisons for 2010

R code to quantify phenotypic differences between fish from the integrated and segregated hatchery lines in 201

Input files for Random Forest analyses

This file contains the original phenotypes and imputed genotypes for individuals prior to Random Forest analyses, along with the corrected phenotypes and genotypes that were analyzed by Random Forest for each of the six fitness traits