Genetic diversity and population structure of Zymoseptoria tritici on bread wheat in Tunisia using SSR markers

Septoria tritici blotch (STB) caused by Zymoseptoria tritici is the primary biotic stress for durum wheat production in Tunisia. The present study was aimed to decipher the genetic diversity and population structure of Z. tritici bread wheat isolates; in the northern regions of Tunisia this pathogen infected exclusively bread wheat. A total of 162 single-spore isolates were sampled during the 2015–2016 growing season from nine naturally infected bread wheat fields at four locations in the three main wheat-growing regions in Tunisia, previously reported as hot spots for Septoria disease (Cap Bon, Bizerte, and Beja). Collected isolates were fingerprinted using twelve polymorphic microsatellite markers to assess the genetic diversity and population structure of Z. tritici. All the microsatellite loci were polymorphic and a high genetic diversity was observed within the whole population. The highest Nei’s index value (0.42), Shannon Index (0.84) and private allele numbers (36) were found at the El Haouaria location (Cap Bon region). Furthermore, a moderate genetic differentiation within and among the surveyed locations (73% and 27%) was confirmed by analysis of molecular variance (AMOVA). On the other hand, the STRUCTURE program was shown to be less sensitive in revealing genetic structure especially at low levels of diversity. Thus, information on the genetic structure of the pathogen population collected from bread wheat is useful for designing and implementing durable and effective management strategies

Stress and sexual reproduction affect the dynamics of the wheat pathogen effector AvrStb6 and strobilurin resistance

Host resistance and fungicide treatments are cornerstones of plant-disease control. Here, we show that these treatments allow sex and modulate parenthood in the fungal wheat pathogen Zymoseptoria tritici. We demonstrate that the Z. tritici–wheat interaction complies with the gene-for-gene model by identifying the effector AvrStb6, which is recognized by the wheat resistance protein Stb6. Recognition triggers host resistance, thus implying removal of avirulent strains from pathogen populations. However, Z. tritici crosses on wheat show that sex occurs even with an avirulent parent, and avirulence alleles are thereby retained in subsequent populations. Crossing fungicide-sensitive and fungicide-resistant isolates under fungicide pressure results in a rapid increase in resistance-allele frequency. Isolates under selection always act as male donors, and thus disease control modulates parenthood. Modeling these observations for agricultural and natural environments reveals extended durability of host resistance and rapid emergence of fungicide resistance. Therefore, fungal sex has major implications for disease control