Impact of Different Fecal Processing Methods on Assessments of Bacterial Diversity in the Human Intestine.

The intestinal microbiota are integral to understanding the relationships between nutrition and health. Therefore, fecal sampling and processing protocols for metagenomic surveys should be sufficiently robust, accurate, and reliable to identify the microorganisms present. We investigated the use of different fecal preparation methods on the bacterial community structures identified in human stools. Complete stools were collected from six healthy individuals and processed according to the following methods: (i) randomly sampled fresh stool, (ii) fresh stool homogenized in a blender for 2 min, (iii) randomly sampled frozen stool, and (iv) frozen stool homogenized in a blender for 2 min, or (v) homogenized in a pneumatic mixer for either 10, 20, or 30 min. High-throughput DNA sequencing of the 16S rRNA V4 regions of bacterial community DNA extracted from the stools showed that the fecal microbiota remained distinct between individuals, independent of processing method. Moreover, the different stool preparation approaches did not alter intra-individual bacterial diversity. Distinctions were found at the level of individual taxa, however. Stools that were frozen and then homogenized tended to have higher proportions of Faecalibacterium, Streptococcus, and Bifidobacterium and decreased quantities of Oscillospira, Bacteroides, and Parabacteroides compared to stools that were collected in small quantities and not mixed prior to DNA extraction. These findings indicate that certain taxa are at particular risk for under or over sampling due to protocol differences. Importantly, homogenization by any method significantly reduced the intra-individual variation in bacteria detected per stool. Our results confirm the robustness of fecal homogenization for microbial analyses and underscore the value of collecting and mixing large stool sample quantities in human nutrition intervention studies

Improved Knowledge and Adoption of Recommended Food Safety Practices by Food Recovery Agency Personnel and Volunteers Participating in the Serving Food Safely Program

The tri-state study reported here tested the effectiveness of a curriculum developed and presented in workshops by Extension and research faculty to increase knowledge and promote safe food handling practices of staff and volunteers of food recovery agencies providing rescued and surplus food to vulnerable populations. Results indicated that knowledge and adoption of recommended food safety practices increased for both staff and volunteers following participation in the workshops. The improvement in food safety knowledge and adoption of recommended food safety practices support the continued use of the food safety curriculum in the three states and possibly other areas in the United States

Spatial population expansion promotes the evolution of cooperation in an experimental Prisoner's Dilemma

Cooperation is ubiquitous in nature, but explaining its existence remains a central interdisciplinary challenge. Cooperation is most difficult to explain in the Prisoner's Dilemma game, where cooperators always lose in direct competition with defectors despite increasing mean fitness. Here we demonstrate how spatial population expansion, a widespread natural phenomenon, promotes the evolution of cooperation. We engineer an experimental Prisoner's Dilemma game in the budding yeast Saccharomyces cerevisiae to show that, despite losing to defectors in nonexpanding conditions, cooperators increase in frequency in spatially expanding populations. Fluorescently labeled colonies show genetic demixing of cooperators and defectors, followed by increase in cooperator frequency as cooperator sectors overtake neighboring defector sectors. Together with lattice-based spatial simulations, our results suggest that spatial population expansion drives the evolution of cooperation by (1) increasing positive genetic assortment at population frontiers and (2) selecting for phenotypes maximizing local deme productivity. Spatial expansion thus creates a selective force whereby cooperator-enriched demes overtake neighboring defector-enriched demes in a "survival of the fastest". We conclude that colony growth alone can promote cooperation and prevent defection in microbes. Our results extend to other species with spatially restricted dispersal undergoing range expansion, including pathogens, invasive species, and humans

Adoption of Plantain within New Zealand Farming Systems

In New Zealand, plantain has been incorporated into the pasture forage base in three ways: as a short-term pure crop; as a major component in “herb mixes” that include clovers and chicory; and as a minor component in perennial grass-based swards. All types are typically grazed in-situ. Given the incentive to optimise the plantain proportion in livestock diet to mitigate nitrogen losses and the observed lack of persistence in grass-dominant pasture over time, there is a need to use various pasture types strategically across a farm system to ensure a long-term sustainable contribution of plantain to feed intake. The inclusion of plantain in the forage base should be relatively straightforward since farmers are already familiar with establishing and managing forage crops and mixed-species pastures. However, there are still technical questions to answer and incentives to implement before we can achieve the region-wide adoption necessary to result in a measurable impact on water quality. The Tararua District, on the east coast of the North Island of New Zealand, represents a useful case study of adoption in a strong dairy farming region. Some underpinning elements for successful adoption were in place: 1) national agronomic experience in using a plantain cultivar released in 1996; and 2) regulatory push in terms of reducing N leaching losses on farms. However, other initiatives were required to see meaningful progress: provision of data from local dairy farm systems, focused on the impact on forage supply/quality; a targeted extension program by a trusted sector leader agency (DairyNZ); individual farmer risk-taking and leadership in establishing and managing new crops and pastures. After three years, awareness is well embedded in the rural community and approximately 30% of dairy farms within the district have started to use plantain

The AU Microscopii Debris Disk: Multiwavelength Imaging and Modeling

(abridged) Debris disks around main sequence stars are produced by the erosion and evaporation of unseen parent bodies. AU Microscopii (GJ 803) is a compelling object to study in the context of disk evolution across different spectral types, as it is an M dwarf whose near edge-on disk may be directly compared to that of its A5V sibling beta Pic. We resolve the disk from 8-60 AU in the near-IR JHK' bands at high resolution with the Keck II telescope and adaptive optics, and develop a novel data reduction technique for the removal of the stellar point spread function. The point source detection sensitivity in the disk midplane is more than a magnitude less sensitive than regions away from the disk for some radii. We measure a blue color across the near-IR bands, and confirm the presence of substructure in the inner disk. Some of the structural features exhibit wavelength-dependent positions. The disk architecture and characteristics of grain composition are inferred through modeling. We approach the modeling of the dust distribution in a manner that complements previous work. Using a Monte Carlo radiative transfer code, we compare a relatively simple model of the distribution of porous grains to a broad data set, simultaneously fitting to midplane surface brightness profiles and the spectral energy distribution. Our model confirms that the large-scale architecture of the disk is consistent with detailed models of steady-state grain dynamics. Here, a belt of parent bodies from 35-40 AU is responsible for producing dust that is then swept outward by the stellar wind and radiation pressures. We infer the presence of very small grains in the outer region, down to sizes of ~0.05 micron. These sizes are consistent with stellar mass-loss rates Mdot_* << 10^2 Mdot_sun.Comment: ApJ accepted, 56 pages, preprint style. Version in emulateapj with high-resolution figures available at http://tinyurl.com/y6ent

Effect of rosiglitazone on progression of atherosclerosis: insights using 3D carotid cardiovascular magnetic resonance

<p>Abstract</p> <p>Background</p> <p>There is recent evidence suggesting that rosiglitazone increases death from cardiovascular causes. We investigated the direct effect of this drug on atheroma using 3D carotid cardiovascular magnetic resonance.</p> <p>Results</p> <p>A randomized, placebo-controlled, double-blind study was performed to evaluate the effect of rosiglitazone treatment on carotid atherosclerosis in subjects with type 2 diabetes and coexisting vascular disease or hypertension. The primary endpoint of the study was the change from baseline to 52 weeks of carotid arterial wall volume, reflecting plaque burden, as measured by carotid cardiovascular magnetic resonance. Rosiglitazone or placebo was allocated to 28 and 29 patients respectively. Patients were managed to have equivalent glycemic control over the study period, but in fact the rosiglitazone group lowered their HbA1c by 0.88% relative to placebo (P < 0.001). Most patients received a statin or fibrate as lipid control medication (rosiglitazone 78%, controls 83%). Data are presented as mean ± SD. At baseline, the carotid arterial wall volume in the placebo group was 1146 ± 550 mm³and in the rosiglitazone group was 1354 ± 532 mm³. After 52 weeks, the respective volumes were 1134 ± 523 mm³and 1348 ± 531 mm³. These changes (-12.1 mm³and -5.7 mm³in the placebo and rosiglitazone groups, respectively) were not statistically significant between groups (P = 0.57).</p> <p>Conclusion</p> <p>Treatment with rosiglitazone over 1 year had no effect on progression of carotid atheroma in patients with type 2 diabetes mellitus compared to placebo.</p

Near-Infrared Classification Spectroscopy: H-band Spectra of Fundamental MK Standards

We present a catalogue of H-band spectra for 85 stars of approximately solar abundance observed at a resolving power of 3000 with the KPNO Mayall 4m FTS. The atlas covers spectral types O7-M5 and luminosity classes I-V as defined on the MK system. We identify both atomic and molecular indices and line-ratios which are temperature and luminosity sensitive allowing spectral classification to be carried out in the H-band. The line ratios permit spectral classification in the presence of continuum excess emission, which is commonly found in pre-main sequence and evolved stars. We demonstrate that with spectra of R = 1000 obtained at SNR > 50 it is possible to derive spectral types within +- 2 subclasses for late-type stars. These data are available electronically through the Astronomical Data Center in addition to being served on the World-Wide-Web.Comment: To appear in the November 20, 1998 issue of ApJ (Volume 508, #1

Clinical classification of symptomatic heterotopic pancreas of the stomach and duodenum: A case series and systematic literature review

BACKGROUND: Heterotopic pancreas (HP) is an aberrant anatomic malformation that occurs most commonly in the upper gastrointestinal tract. While the majority of heterotopic pancreatic lesions are asymptomatic, many manifest severe clinical symptoms which require surgical or endoscopic intervention. Understanding of the clinical manifestations and symptoms of HP is limited due to the lack of large volume studies in the literature. The purpose of this study is to review symptomatic cases at a single center and compare these to a systematic review of the literature in order to characterize common clinical manifestations and treatment of this disease. AIM: To classify the common clinical manifestations of heterotopic pancreas. METHODS: A retrospective review was conducted of pathologic samples containing heterotopic pancreas from 2000-2018. Review was limited to HP of the upper gastrointestinal tract due to the frequency of presentation in this location. Symptomatic patients were identified from review of the medical records and clinical symptoms were tabulated. These were compared to a systematic review of the literature utilizing PubMed and Embase searches for papers pertaining to heterotopic pancreas. Publications describing symptomatic presentation of HP were selected for review. Information including demographics, symptoms, presentation and treatment were compiled and analyzed. RESULTS: Twenty-nine patient were identified with HP at a single center, with six of these identified has having clinical symptoms. Clinical manifestations included, gastrointestinal bleeding, gastric ulceration with/without perforation, pancreatitis, and gastric outlet obstruction. Systemic review of the literature yielded 232 publications detailing symptomatic cases with only 20 studies describing ten or more patients. Single and multi-patient studies were combined to form a cohort of 934 symptomatic patients. The majority of patients presented with abdominal pain (67%) combined with one of the following clinical categories: (1) Dyspepsia, (n = 445, 48%); (2) Pancreatitis (n = 260, 28%); (3) Gastrointestinal bleeding (n = 80, 9%); and (4) Gastric outlet obstruction (n = 80, 9%). The majority of cases (n = 832, 90%) underwent surgical or endoscopic resection with 85% reporting resolution or improvement in their symptoms. CONCLUSION: Heterotopic pancreas can cause significant clinical symptoms in the upper gastrointestinal tract. Better understanding and classification of this disease may result in more accurate identification and treatment of this malformation