Spectral engineering of optical microresonators in anisotropic lithium niobate crystal

On-chip optical microresonators are essential building blocks in integrated optics. The ability to arbitrarily engineer their resonant frequencies is crucial for exploring novel physics in synthetic frequency dimensions and practical applications like nonlinear optical parametric processes and dispersion-engineered frequency comb generation. Photonic crystal ring (PhCR) resonators are a versatile tool for such arbitrary frequency engineering, by controllably creating mode splitting at selected resonances. To date, these PhCRs have mostly been demonstrated in isotropic photonic materials, while such engineering could be significantly more complicated in anisotropic platforms that often offer more fruitful optical properties. Here, we realize the spectral engineering of chip-scale optical microresonators in the anisotropic lithium niobate (LN) crystal by a gradient design that precisely compensates for variations in both refractive index and perturbation strength. We experimentally demonstrate controllable frequency splitting at single and multiple selected resonances in LN PhCR resonators with different sizes, while maintaining high Q-factors up to 1 million. Moreover, we experimentally construct a sharp boundary in the synthetic frequency dimension based on an actively modulated x-cut LN gradient-PhCR, opening up new paths toward the arbitrary control of electro-optic comb spectral shapes and exploration of novel physics in the frequency degree of freedom.Comment: 19 pages, 5 figure

A power-efficient integrated lithium niobate electro-optic comb generator

Integrated electro-optic (EO) frequency combs are essential components for future applications in optical communications, light detection and ranging, optical computation, sensing and spectroscopy. To date, broadband on-chip EO combs are typically generated in high-quality-factor micro-resonators, while the more straightforward and flexible non-resonant method, usually using single or cascaded EO phase modulators, often requires high driving power to realize a reasonably strong modulation index. Here, we show that the phase modulation efficiency of an integrated lithium niobate modulator could be dramatically enhanced by passing optical signals through the modulation electrodes for a total of 4 round trips, via multiple low-loss TE0/TE1 mode multiplexers and waveguide crossings, reducing electrical power consumption by more than one order of magnitude. Using devices fabricated from a wafer-scale stepper lithography process, we demonstrate a broadband optical frequency comb featuring 47 comb lines at a 25-GHz repetition rate, using a moderate RF driving power of 28 dBm (0.63 W). Leveraging the excellent tunability in repetition rate and operation wavelength, our power-efficient EO comb generator could serve as a compact low-cost solution for future high-speed data transmission, sensing and spectroscopy, as well as classical and quantum optical computation systems.Comment: 9 pages, 4 fingure

Integrated lithium niobate microwave photonic processing engine

Integrated microwave photonics is an intriguing field that leverages integrated photonic technologies for the generation, transmission, and manipulation of microwave signals in chip-scale optical systems. In particular, ultrafast processing and computation of analog electronic signals in the optical domain with high fidelity and low latency could enable a variety of applications such as MWP filters, microwave signal processing, and image recognition. An ideal photonic platform for achieving these integrated MWP processing tasks shall simultaneously offer an efficient, linear and high-speed electro-optic modulation block to faithfully perform microwave-optic conversion at low power, and a low-loss functional photonic network that can be configured for a variety of signal processing tasks, as well as large-scale, low-cost manufacturability to monolithically integrate the two building blocks on the same chip. In this work, we demonstrate such an integrated MWP processing engine based on a thin-film lithium niobate platform capable of performing multi-purpose processing and computation tasks of analog signals up to 92 giga samples per second at CMOS-compatible voltages. We demonstrate high-speed analog computation, i.e., first- and second-order temporal integration and differentiation with computing accuracies up to 98.1 %, and deploy these functions to showcase three proof-of-concept applications, namely, ordinary differential equation solving, ultra-wideband signal generation and high-speed edge detection of images. We further leverage the image edge detector to enable a photonic-assisted image segmentation model that could effectively outline the boundaries of melanoma lesion in medical diagnostic images, achieving orders of magnitude faster processing speed and lower power consumption than conventional electronic processors

CDD: a Conserved Domain Database for protein classification

The Conserved Domain Database (CDD) is the protein classification component of NCBI's Entrez query and retrieval system. CDD is linked to other Entrez databases such as Proteins, Taxonomy and PubMed®, and can be accessed at http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=cdd. CD-Search, which is available at http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi, is a fast, interactive tool to identify conserved domains in new protein sequences. CD-Search results for protein sequences in Entrez are pre-computed to provide links between proteins and domain models, and computational annotation visible upon request. Protein–protein queries submitted to NCBI's BLAST search service at http://www.ncbi.nlm.nih.gov/BLAST are scanned for the presence of conserved domains by default. While CDD started out as essentially a mirror of publicly available domain alignment collections, such as SMART, Pfam and COG, we have continued an effort to update, and in some cases replace these models with domain hierarchies curated at the NCBI. Here, we report on the progress of the curation effort and associated improvements in the functionality of the CDD information retrieval system

Advancing large-scale thin-film PPLN nonlinear photonics with segmented tunable micro-heaters

Thin-film periodically poled lithium niobate (TF-PPLN) devices have recently gained prominence for efficient wavelength conversion processes in both classical and quantum applications. However, the patterning and poling of TF-PPLN devices today are mostly performed at chip scales, presenting a significant bottleneck for future large-scale nonlinear photonic systems that require the integration of multiple nonlinear components with consistent performance and low cost. Here, we take a pivotal step towards this goal by developing a wafer-scale TF-PPLN nonlinear photonic platform, leveraging ultraviolet stepper lithography and an automated poling process. To address the inhomogeneous broadening of the quasi-phase matching (QPM) spectrum induced by film thickness variations across the wafer, we propose and demonstrate segmented thermal optic tuning modules that can precisely adjust and align the QPM peak wavelengths in each section. \hl{Using the segmented micro-heaters, we show the successful realignment of inhomogeneously broadened multi-peak QPM spectra with up to 57$\%$ enhancement of conversion efficiency. We achieve a high normalized conversion efficiency of 3802$\%$W$^{-1}$cm$^{-2}$ in a 6 mm long PPLN waveguide, recovering 84$\%$ of the theoretically predicted efficiency in this device.} The advanced fabrication techniques and segmented tuning architectures presented herein pave the way for wafer-scale integration of complex functional nonlinear photonic circuits with applications in quantum information processing, precision sensing and metrology, and low-noise-figure optical signal amplification

Multiple Poses and Thermodynamics of Ligands Targeting Protein Surfaces: The Case of Furosemide Binding to mitoNEET in Aqueous Solution

Human NEET proteins, such as NAF-1 and mitoNEET, are homodimeric, redox iron-sulfur proteins characterized by triple cysteine and one histidine-coordinated [2Fe-2S] cluster. They exist in an oxidized and reduced state. Abnormal release of the cluster is implicated in a variety of diseases, including cancer and neurodegeneration. The computer-aided and structure-based design of ligands affecting cluster release is of paramount importance from a pharmaceutical perspective. Unfortunately, experimental structural information so far is limited to only one ligand/protein complex. This is the X-ray structure of furosemide bound to oxidized mitoNEET. Here we employ an enhanced sampling approach, Localized Volume-based Metadynamics, developed by some of us, to identify binding poses of furosemide to human mitoNEET protein in solution. The binding modes show a high variability within the same shallow binding pocket on the protein surface identified in the X-ray structure. Among the different binding conformations, one of them is in agreement with the crystal structure’s one. This conformation might have been overstabilized in the latter because of the presence of crystal packing interactions, absent in solution. The calculated binding affinity is compatible with experimental data. Our protocol can be used in a straightforward manner in drug design campaigns targeting this pharmaceutically important family of proteins

Systematic Investigation of Millimeter-Wave Optic Modulation Performance in Thin-Film Lithium Niobate

Millimeter-wave (mmWave) band (30 - 300 GHz) is an emerging spectrum range for wireless communication, short-range radar and sensor applications. mmWave-optic modulators that could efficiently convert mmWave signals into optical domain are crucial components for long-haul transmission of mmWave signals through optical networks. At these ultrahigh frequencies, however, the modulation performances are highly sensitive to the transmission line loss as well as the velocity- and impedance-matching conditions, while precise measurements and modeling of these parameters are often non-trivial. Here we present a systematic investigation of the mmWave-optic modulation performances of thin-film lithium niobate modulators through theoretical modeling, electrical verifications and electro-optic measurements at frequencies up to 325 GHz. Based on our experimentally verified model, we demonstrate thin-film lithium niobate mmWave-optic modulators with a measured 3-dB electro-optic bandwidth of 170 GHz and a 6-dB bandwidth of 295 GHz. The device also shows a low RF half-wave voltage of 7.3 V measured at an ultrahigh modulation frequency of 250 GHz. This work provides a comprehensive guideline for the design and characterization of mmWave-optic modulators and paves the way toward future integrated mmWave photonic systems for beyond-5G communication and radar applications

Integrated lithium niobate microwave photonic processing engine

<p>Available data and code for manuscript: "Integrated lithium niobate microwave photonic processing engine"</p> <p>Contact [email protected] if problems with code arise. </p&gt