Do terrestrial ectoparasites disperse with penguins?

Dispersal plays a critical role in evolution. Rare long-distance movements can lead to allopatric speciation, whereas frequent movements can facilitate gene flow among disjunct populations and prevent divergence. Dispersal between populations of a species may be difficult to observe directly, and is often inferred from indirect measures such as species occurrence data. Increasingly, however, high resolution genomic data are being used to clarify dispersal and gene flow, in many cases contradicting past assumptions. Islands are excellent model regions for investigating dispersal as they offer replicated habitats with clear geographic boundaries. The sub-Antarctic comprises some of the most geographically isolated island ecosystems in the world, representing an ideal model system for assessing the evolutionary consequences of long-distance dispersal. Strong winds, circumpolar oceanic currents, and extreme climatic cycles are thought to have effectively isolated many sub-Antarctic ecosystems, but a growing body of molecular evidence is beginning to question this rhetoric, with numerous species showing connectivity across the region. Connectivity patterns are, however, complex and are not always predictable from an organism’s inferred dispersal capacity. With environmental change placing unprecedented pressure on isolated ecosystems, there is a pressing need for improved understanding of dispersal processes and population connectivity via genomic analyses of diverse taxa. A number of sub-Antarctic species exhibit gene flow across the region despite lacking active long-distance dispersal capabilities. Brooding, sedentary crustaceans have, for example, rafted on buoyant kelp across thousands of kilometres of open ocean in the sub-Antarctic. The close symbiotic or parasitic relationships that such species maintain with the kelp has resulted in whole communities dispersing together. Indeed, active dispersal is often limited in parasites, which can depend almost entirely on mobile hosts for long-distance movement. A parasite that is unable to travel far with its host would, therefore, be expected to show considerable phylogeographic structure. For example, penguins primarily travel underwater but are hosts to terrestrial ectoparasites (most commonly ticks - Ixodes spp.) when they come ashore to breed. Aquatic host movements may represent a challenge to the survival of penguin ticks, restricting gene flow across their range. This thesis first reviews connectivity patterns and challenges throughout the sub-Antarctic, and then uses a multidisciplinary approach (genomic and physiological data) to test whether some terrestrial parasites (ticks: Acari) are able to travel long distances at sea with their aquatically dispersing hosts (penguins). Results indicate that penguin ticks are physiologically resilient, and may be capable of surviving the conditions faced during aquatic penguin movements between colonies. However, these movements appear to be too sporadic to maintain gene flow across the ticks’ ranges, resulting in broad-scale geographic structure. In contrast, movement on fine scales (within colonies) is inferred – based on lack of genomic structure – to be common, possibly facilitated by social interactions of hosts. These results emphasise the important role of dispersal in isolated regions for range expansion and diversification, and highlight the adaptability of parasites to their hosts’ environments

Local, but not long-distance dispersal of penguin ticks between two sub-Antarctic islands

Advances in high throughput genomic approaches are enabling the accurate appraisal of movements of diverse species, previously considered intractable. The impact of long-distance dispersal and distribution changes on species interactions (such as host-parasite interactions) is of particular importance as attempts are made to project how ecosystems will shift under environmental change. The sub-Antarctic region, comprising isolated islands separated by hundreds to thousands of kilometres of open ocean, presents an ideal model system for studying long-distance dispersal, distribution, and ecosystem change. Here we used genomic methods to determine the extent of movement of penguin ticks (Ixodes uriae) among different host species, and among penguin colonies at small (within an island) and large (among islands separated by >6000 km) scales, in the sub-Antarctic region. Our results suggest that I. uriae ticks may be readily shared between distantly related penguin species with similar phenology, but indicate that – as inferred by previous research – ticks are less likely to be shared between flighted and non-flighted sea- birds. We also find evidence for small-scale movements of penguin ticks with their hosts, but no evidence for movements between islands separated by thousands of kilometers of open ocean. These inferred limitations to penguin tick movement could be the result of restricted host movements or the inability of penguin ticks to survive extended trips at sea. Our findings help elucidate parasite-host dynamics, with implications for host health and persistence in a region experiencing rapid environmental change

Local, but not long-distance dispersal of penguin ticks between two sub-Antarctic islands

Advances in high throughput genomic approaches are enabling the accurate appraisal of movements of diverse species, previously considered intractable. The impact of long-distance dispersal and distribution changes on species interactions (such as host-parasite interactions) is of particular importance as attempts are made to project how ecosystems will shift under environmental change. The sub-Antarctic region, comprising isolated islands separated by hundreds to thousands of kilometres of open ocean, presents an ideal model system for studying long-distance dispersal, distribution, and ecosystem change. Here we used genomic methods to determine the extent of movement of penguin ticks (Ixodes uriae) among different host species, and among penguin colonies at small (within an island) and large (among islands separated by >6000 km) scales, in the sub-Antarctic region. Our results suggest that I. uriae ticks may be readily shared between distantly related penguin species with similar phenology, but indicate that – as inferred by previous research – ticks are less likely to be shared between flighted and non-flighted sea- birds. We also find evidence for small-scale movements of penguin ticks with their hosts, but no evidence for movements between islands separated by thousands of kilometers of open ocean. These inferred limitations to penguin tick movement could be the result of restricted host movements or the inability of penguin ticks to survive extended trips at sea. Our findings help elucidate parasite-host dynamics, with implications for host health and persistence in a region experiencing rapid environmental change.a Rutherford Discovery Fellowship (RDF-UOO1803). KLM was funded by the Shackleton Scholarship Fund, and the Australian National University and the Australian Government via an ANU University Research Scholarship

Acceptance and commitment therapy processes and their association with distress in cancer: a systematic review and meta-analysis

Around 42% of individuals with cancer experience distress. Acceptance and Commitment Therapy (ACT) can reduce distress, but effects are small, and mechanisms unclear. This review aimed to identify associations between ACT processes and distress in cancer. Search terms included cancer, ACT processes, self-compassion, and distress. Six online databases and grey literature were searched to March 2022. Of 6555 papers screened, 108 studies were included with a total of 17195 participants. Five meta-analyses of seventy-seven studies were conducted. Random effects meta-analyses of correlations revealed higher scores on flexible processes (acceptance, present moment awareness, self-compassion) were associated with lower distress (rpooled = -0.24, -0.39, -0.48, respectively); whilst higher scores on inflexible processes (experiential avoidance, cognitive fusion) were associated with higher distress (rpooled = 0.58, 0.57, respectively). Meta-analyses displayed moderate-to-high heterogeneity with most studies assessed as low risk of bias. Meta-regressions revealed no significant moderators (stage, time since diagnosis, gender and age). This review provides a theoretically aligned evidence base for associations between ACT processes and distress in cancer, supporting elements of ACT theory and providing targeted directions for intervention development. Due to limited evidence, future research should focus on the under-investigated processes (self-as-context, values, committed action) and conducting mediation analysis of ACT processes on distress in cancer in controlled trials

A universe in a global monopole

We investigate brane physics in a universe with an extra dimensional global monopole and negative bulk cosmological constant. The graviton zero mode is naturally divergent; we thus invoke a physical cut-off to induce four dimensional gravity on a brane at the monopole core. Independently, the massive Kaluza-Klein modes have naturally compactified extra dimensions, inducing a discrete spectrum. This spectrum remains consistent with four dimensional gravity on the brane, even for small mass gap. Extra dimensional matter fields also induce four dimensional matter fields on the brane, with the same Kaluza-Klein spectrum of excited states. We choose parameters to solve the hierarchy problem; that is, to induce the observed hierarchy between particle and Planck scales in the effective four dimensional universe.Comment: 22 pages, 2 eps figures, revte

Chemosensitivity of IDH1-Mutated Gliomas Due to an Impairment in PARP1-Mediated DNA Repair

Mutations in isocitrate dehydrogenase (IDH) are the most prevalent genetic abnormalities in lower grade gliomas. The presence of these mutations in glioma is prognostic for better clinical outcomes with longer patient survival. In the present study, we found that defects in oxidative metabolism and 2-HG production confer chemosensitization in IDH1-mutated glioma cells. In addition, temozolomide (TMZ) treatment induced greater DNA damage and apoptotic changes in mutant glioma cells. The PARP1-associated DNA repair pathway was extensively compromised in mutant cells due to decreased NAD+ availability. Targeting the PARP DNA repair pathway extensively sensitized IDH1-mutated glioma cells to TMZ. Our findings demonstrate a novel molecular mechanism that defines chemosensitivity in IDH-mutated gliomas. Targeting PARP-associated DNA repair may represent a novel therapeutic strategy for gliomas

Kernel Flow:a high channel count scalable time-domain functional near-infrared spectroscopy system

Significance: Time-domain functional near-infrared spectroscopy (TD-fNIRS) has been considered as the gold standard of noninvasive optical brain imaging devices. However, due to the high cost, complexity, and large form factor, it has not been as widely adopted as continuous wave NIRS systems. Aim: Kernel Flow is a TD-fNIRS system that has been designed to break through these limitations by maintaining the performance of a research grade TD-fNIRS system while integrating all of the components into a small modular device. Approach: The Kernel Flow modules are built around miniaturized laser drivers, custom integrated circuits, and specialized detectors. The modules can be assembled into a system with dense channel coverage over the entire head. Results: We show performance similar to benchtop systems with our miniaturized device as characterized by standardized tissue and optical phantom protocols for TD-fNIRS and human neuroscience results. Conclusions: The miniaturized design of the Kernel Flow system allows for broader applications of TD-fNIRS.</p

Expanding Antarctic biogeography: microbial ecology of Antarctic island soils

The majority of islands surrounding the Antarctic continent are poorly characterized in terms of microbial macroecology due to their remote locations, geographical isolation and access difficulties. The 2016/2017 Antarctic Circumnavigation Expedition (ACE) provided unprecedented access to a number of these islands. In the present study we use metagenomic methods to investigate the microbial ecology of soil samples recovered from 11 circum-Antarctic islands as part of ACE, and to investigate the functional potential of their soil microbial communities. Comparisons of the prokaryote and lower eukaryote phylogenetic compositions of the soil communities indicated that the various islands harbored spatially distinct microbiomes with limited overlap. In particular, we identified a high prevalence of lichen-associated fungal taxa in the soils, suggesting that terrestrial lichens may be one of the key drivers of soil microbial ecology on these islands. Differential abundance and redundancy analyses suggested that these soil microbial communities are also strongly shaped by multiple abiotic factors, including soil pH and average annual temperatures. Most importantly, we demonstrate that the islands sampled in this study can be clustered into three distinct large-scale biogeographical regions in a conservation context, the sub-, Maritime and Continental Antarctic, which are distinct in both environmental conditions and microbial ecology, but are consistent with the widely-used regionalization applied to multicellular Antarctic terrestrial organisms. Functional profiling of the island soil metagenomes from these three broad biogeographical regions also suggested a degree of functional differentiation, reflecting their distinct microbial ecologies. Taken together, these results represent the most extensive characterization of the microbial ecology of Antarctic island soils to date

Human and murine clonal CD8+ T cell expansions arise during tuberculosis because of TCR selection

The immune system can recognize virtually any antigen, yet T cell responses against several pathogens, including Mycobacterium tuberculosis, are restricted to a limited number of immunodominant epitopes. The host factors that affect immunodominance are incompletely understood. Whether immunodominant epitopes elicit protective CD8+ T cell responses or instead act as decoys to subvert immunity and allow pathogens to establish chronic infection is unknown. Here we show that anatomically distinct human granulomas contain clonally expanded CD8+ T cells with overlapping T cell receptor (TCR) repertoires. Similarly, the murine CD8+ T cell response against M. tuberculosis is dominated by TB10.44-11-specific T cells with extreme TCRß bias. Using a retro genic model of TB10.44-11-specific CD8+ Tcells, we show that TCR dominance can arise because of competition between clonotypes driven by differences in affinity. Finally, we demonstrate that TB10.4-specific CD8+ T cells mediate protection against tuberculosis, which requires interferon-? production and TAP1-dependent antigen presentation in vivo. Our study of how immunodominance, biased TCR repertoires, and protection are inter-related, provides a new way to measure the quality of T cell immunity, which if applied to vaccine evaluation, could enhance our understanding of how to elicit protective T cell immunity.This work was supported by the Portuguese Foundation for Science and Technology individual fellowship (CNA) www.fct.pt, a National Institutes of Health Grant R01 AI106725 (SMB) www.nih.gov, and a Center for AIDS Research Grant P30 AI 060354 (SMB) www.nih.gov. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript