Mitigation Ponds Offer Drought Resiliency for Western Spadefoot (Spea hammondii) Populations

Synergistic effects of habitat loss, drought, and climate change exacerbate amphibian declines. In southern California urbanization continues to convert natural habitat, while prolonged drought reduces surface water availability. Protection of biodiversity may be provided through mitigation; however, the long-term effectiveness of different strategies is often unreported. As a mitigation measure for building a new development within occupied Spea hammondii (western spadefoot) habitat in Orange County, California, artificial breeding pools were constructed at two off-site locations. Spea hammondii tadpoles were translocated from the pools at the development site to two off-site locations in 2005–2006. We conducted surveys a decade later (2016) to determine if S. hammondii were persisting and breeding successfully at either the original development site or the human-made pools at the two mitigation sites. We also verified hydroperiods of any existing pools at all three locations to see if any held water long enough for successful S. hammondii recruitment through metamorphosis. During our study, no pooling water was detected at two of three main sites surveyed, and no S. hammondii were observed at these locations. Twelve of the 14 pools created at only one of the two mitigation sites held water for over 30 d, and we detected successful breeding at seven of these pools. Recruitment in some mitigation ponds indicated that S. hammondii habitat can be created and maintained over 10+ yr, even during the fifth year of a catastrophic drought. Therefore, this may also serve as a conservation strategy to mitigate climate change and habitat loss. During our study, no pooling water was detected at two of three main sites surveyed, and no S. hammondii were observed at these locations. Twelve of the 14 pools created at a third site held water for over 30 days and we detected successful breeding at seven of these pools in 2016. Recruitment in some mitigation ponds indicated that S. hammondii habitat can be created and maintained over 10+ years, even during the fifth year of a catastrophic drought, therefore this may also serve as a management strategy for conservation with regard to climate change and habitat loss

A Genome-Wide Characterization of MicroRNA Genes in Maize

MicroRNAs (miRNAs) are small, non-coding RNAs that play essential roles in plant growth, development, and stress response. We conducted a genome-wide survey of maize miRNA genes, characterizing their structure, expression, and evolution. Computational approaches based on homology and secondary structure modeling identified 150 high-confidence genes within 26 miRNA families. For 25 families, expression was verified by deep-sequencing of small RNA libraries that were prepared from an assortment of maize tissues. PCR–RACE amplification of 68 miRNA transcript precursors, representing 18 families conserved across several plant species, showed that splice variation and the use of alternative transcriptional start and stop sites is common within this class of genes. Comparison of sequence variation data from diverse maize inbred lines versus teosinte accessions suggest that the mature miRNAs are under strong purifying selection while the flanking sequences evolve equivalently to other genes. Since maize is derived from an ancient tetraploid, the effect of whole-genome duplication on miRNA evolution was examined. We found that, like protein-coding genes, duplicated miRNA genes underwent extensive gene-loss, with ∼35% of ancestral sites retained as duplicate homoeologous miRNA genes. This number is higher than that observed with protein-coding genes. A search for putative miRNA targets indicated bias towards genes in regulatory and metabolic pathways. As maize is one of the principal models for plant growth and development, this study will serve as a foundation for future research into the functional roles of miRNA genes

Movement and habitat selection of the western spadefoot (Spea hammondii) in southern California.

Agricultural activity, urban development and habitat alteration have caused the disappearance of the western spadefoot (Spea hammondii) from 80% of its geographic range in southern California. Despite the western spadefoot's continuing decline, little research has been conducted on its natural history. The home range of adult spadefoots is unknown, and their use of upland habitat is poorly understood. Both factors are important for the long-term conservation of the species because adult spadefoots spend the majority of their lives away from breeding pools in self-excavated burrows. Between January 2012 and January 2013, we surgically implanted radio transmitters in 15 spadefoots at two locations and recorded their movements and habitat use. The mean distance moved between burrow locations was 18 m (SD ± 24.1 m, range1-204 m). The mean distance of burrows from the breeding pools was 40 m (SD ± 37.42 m, range 1-262 m). Rain was a significant predictor of spadefoot movement, with more rain predicting higher probability of movement and larger distances moved. At remote sensing scale (1 m) spadefoots selected grassland habitat for their burrow locations. At the microsite scale (< 1 m) spadefoots strongly selected duff over grass or shrub cover. Spadefoots burrowed in friable, sandy/loam soil with significantly less clay than random pseudoabsence points. This research enhances our understanding of a little-studied species and will contribute to the development of effective management plans for the western spadefoot

Trace Elements in Stormflow, Ash, and Burned Soil following the 2009 Station Fire in Southern California

<div><p>Most research on the effects of wildfires on stream water quality has focused on suspended sediment and nutrients in streams and water bodies, and relatively little research has examined the effects of wildfires on trace elements. The purpose of this study was two-fold: 1) to determine the effect of the 2009 Station Fire in the Angeles National Forest northeast of Los Angeles, CA on trace element concentrations in streams, and 2) compare trace elements in post-fire stormflow water quality to criteria for aquatic life to determine if trace elements reached concentrations that can harm aquatic life. Pre-storm and stormflow water-quality samples were collected in streams located inside and outside of the burn area of the Station Fire. Ash and burned soil samples were collected from several locations within the perimeter of the Station Fire. Filtered concentrations of Fe, Mn, and Hg and total concentrations of most trace elements in storm samples were elevated as a result of the Station Fire. In contrast, filtered concentrations of Cu, Pb, Ni, and Se and total concentrations of Cu were elevated primarily due to storms and not the Station Fire. Total concentrations of Se and Zn were elevated as a result of both storms and the Station Fire. Suspended sediment in stormflows following the Station Fire was an important transport mechanism for trace elements. Cu, Pb, and Zn primarily originate from ash in the suspended sediment. Fe primarily originates from burned soil in the suspended sediment. As, Mn, and Ni originate from both ash and burned soil. Filtered concentrations of trace elements in stormwater samples affected by the Station Fire did not reach levels that were greater than criteria established for aquatic life. Total concentrations for Fe, Pb, Ni, and Zn were detected at concentrations above criteria established for aquatic life.</p></div

Concentrations of (A) suspended sediment and (B) DOC in water samples collected during and after the 2009 Station Fire, California.

<p>Box whiskers represent the 10^th and 90^th percentile. Boxplots with different letters indicate statistical differences (p≤0.05).</p

Spearman's correlation of trace elements to precipitation and select water-quality constituents.

<p>Number of samples = 32.</p

pH in water and ash leachate samples collected before, during, and after the 2009 Station Fire, California.

<p>Box whiskers represent the 10^th and 90^th percentile. Boxplots with different letters indicate statistical differences (p≤0.05).</p

Results of non-parametric rank-sum tests for differences in trace element concentrations based on type of ash sample collected for the 2009 Station Fire, California.

<p>Results of non-parametric rank-sum tests for differences in trace element concentrations based on type of ash sample collected for the 2009 Station Fire, California.</p

Stream sites sampled for water-quality during and after the 2009 Station Fire, California.

<p>Stream sites sampled for water-quality during and after the 2009 Station Fire, California.</p

Location of study area, collection sites, and weather stations, 2009 Station Fire, California.

<p>Location of study area, collection sites, and weather stations, 2009 Station Fire, California.</p