Northern Bobwhite Population Structure and Diversity in Texas and the Great Plains

Many northern bobwhite (Colinus virginianus) populations have been experiencing severe declines. This decline is of concern to wildlife biologists, landowners, and legislators due to the popularity of this species as a game bird. Previous molecular genetic analyses for populations inhabiting intact habitats in South Texas indicate the northern bobwhite population in this region is genetically diverse with low population structure. W[e] assessed whether landscape affects the population structure and diversity for northern bobwhite in Texas and the Great Plains. We extracted DNA from hunter-harvested northern bobwhites from 19 sites in South Texas from 2004 to 2010. We analyzed 7 microsatellites (Quail 5, 8, 9, 10, 11, 12, and 15). We used FST to measure genetic structure and AMOVA for genetic variation. We built 3 matrices to compare the genetic structure with the landscape. Geographic distances (km) between sample locations were ascertained using Google Earth. A matrix of barriers incorporated large water bodies and highways. We used the Biologist Ranking Information from the National Bobwhite Conservation Initiative for the third matrix to identify the number of different habitat patches a quail would need to cross from ranch to ranch. These matrices were compared to the genetic structure (pairwise FST), using Mantel tests with 10,000 permutations. We used partial Mantel tests to test the correlation of pairwise FST to combinations of distance and barriers, distance and habitat, and barriers and habitat. Overall FST was \u3c 0.01, suggesting low levels of population differentiation and AMOVA revealed most variation was within individuals. All Mantel tests had a positive correlation with genetic differentiation; however, barriers appear to be important factors for the observed genetic patterns

Genetic Diversity and Relatedness Within and Among Northern Bobwhite Coveys in South Texas

Although biologists have studied northern bobwhite (Colinus virginianus) genetic diversity and population structure, there is little known about the genetic diversity, structure, and relatedness of their winter coveys. Both flexible mating strategies and the fall shuffle may have implications for inbreeding and genetic diversity in northern bobwhite populations. Our goal was to determine genetic diversity and relatedness for coveys on a private ranch in Jim Hogg County in South Texas. During the 2010–2011 and 2011–2012 hunting seasons, 96 northern bobwhites were sampled from 29 coveys. We analyzed 11 northern bobwhite microsatellite DNA loci, measured genetic structure with an Analysis of Molecular Variance and FST, and determined an inbreeding coefficient (Fi). We determined Queller and Goodnight’s coefficients of relatedness (R) and then used a maximum-likelihood algorithm in COLONY to assign relationships (parent–offspring, full siblings, and half siblings). Most genetic variation (92%) was within coveys. The overall FST was 0.073, indicating moderate genetic structure among coveys. Relationship coefficients ranged from –0.82 to 1.00 but most of the bird pairs were unrelated (R = -0.004 ± 0.002 SE). In 2010–2011, COLONY assigned 130–149 half sibling, 1–4 full sibling, and 0–3 parent-offspring pairs (n = 2,887, 5 trials, probability \u3e0.99). Thirteen coveys (56%) had related individuals (n = 20 pairs). In 2011– 2012, COLONY assigned 5–10 half sibling and 1 full sibling pairs (n = 161). Two coveys (33%) had related individuals (2 pairs). The occurrence of relatives in different coveys suggests that the fall shuffle is effective at mixing families and the high half sibling count among coveys may suggest polygamy. These strategies may help northern bobwhite populations maintain moderate genetic diversity

Northern Bobwhite Home Range Sizes and Movements in South Texas

Northern bobwhites (Colinus virginianus) often have relatively small home ranges (1-km radius); however, occasional long-distance movements also have been recorded, which may help maintain connectivity and genetic diversity within and among populations. We quantified movements of radiocollared northern bobwhites on the King Ranch in South Texas, USA. For each bird we determined core area, home range (fixed kernel), mean movement rate, and maximum distance moved. We compared movements across age, gender, precipitation trends, and plant communities using Mann–Whitney U and Kruskal–Wallis tests. Almost half (44.7%) of the birds moved \u3e400 m (max. distance moved) and 46 (16%) moved \u3e1 km over the course of the study. Males had higher movement rates (juvenile x̄ = 54.9 m, SE = 1.77 m, n = 64; adult x̄ = 56.6 m, SE = 1.95 m, n = 65) than females (juvenile x̄ = 51.26 m, SE = 1.80 m, n = 102; adult x̄ = 48.14 m, SE = 1.49 m, n = 62; χ23,289 = 14.90, P = 0.02). Maximum distance moved was longer in dry years (609.8 ± 136.3 m) compared with normal or moist years (x̄ = 542.8 m, SE = 47.0 m; x̄ = 536.6 m, SE = 28.8 m, respectively, n = 293). Northern bobwhites moved farther in dry years, possibly to find cover and food. A small percentage made relatively long-distance movements (n = 18, 6%, \u3e1.6 km, max. 6.5 km). These rare movements may influence gene flow and genetic structure of northern bobwhite populations in South Texas

Application of Metapopulation Theory to Northern Bobwhite Conservation

Northern bobwhite (Colinus virginianus) populations have declined throughout the majority of the species’ range, and have experienced the largest declines in fragmented habitats, suggesting landscape scale processes may be responsible for this decline. We used the results from a stochastic population dynamics model of South Texas bobwhites as conceptual justification for use of metapopulation theory in bobwhite management. Annual quasi-extinction probabilities for isolated bobwhite populations were 0.003 (95% CI: 0.001 0.006), 0.105 (95% CI: 0.083 0.126), and 0.773 (95% CI: 0.750 0.796) for simulated populations harvested at 20, 30, and 40% annually. The probability of regional persistence at 30% harvest increased to ~ 100% in scenarios where we modeled 5 occupied hypothetical 800-ha habitat patches; however, at 40% harvest rates, probability of regional metapopulation persistence did not reach 95% until 12 habitat patches were occupied. This suggests bobwhites probably require somewhere from 800 to 9,600 ha of available habitat space to maintain 95% probability of regional metapopulation persistence as harvest varies from 0 to 40% annually. Our results have strong implications for bobwhite harvest management given the high probability of quasi-extinction of isolated populations at rates of harvest 25%. Multiple patches of habitat (where individual patch size is 800 ha) must be available to ensure bobwhite metapopulation persistence

What we have learned from the framework for ocean observing: evolution of the global ocean observing system

The Global Ocean Observing System (GOOS) and its partners have worked together over the past decade to break down barriers between open-ocean and coastal observing, between scientific disciplines, and between operational and research institutions. Here we discuss some GOOS successes and challenges from the past decade, and present ideas for moving forward, including highlights of the GOOS 2030 Strategy, published in 2019. The OceanObs’09 meeting in Venice in 2009 resulted in a remarkable consensus on the need for a common set of guidelines for the global ocean observing community. Work following the meeting led to development of the Framework for Ocean Observing (FOO) published in 2012 and adopted by GOOS as a foundational document that same year. The FOO provides guidelines for the setting of requirements, assessing technology readiness, and assessing the usefulness of data and products for users. Here we evaluate successes and challenges in FOO implementation and consider ways to ensure broader use of the FOO principles. The proliferation of ocean observing activities around the world is extremely diverse and not managed, or even overseen by, any one entity. The lack of coherent governance has resulted in duplication and varying degrees of clarity, responsibility, coordination and data sharing. GOOS has had considerable success over the past decade in encouraging voluntary collaboration across much of this broad community, including increased use of the FOO guidelines and partly effective governance, but much remains to be done. Here we outline and discuss several approaches for GOOS to deliver more effective governance to achieve our collective vision of fully meeting society’s needs. What would a more effective and well-structured governance arrangement look like? Can the existing system be modified? Do we need to rebuild it from scratch? We consider the case for evolution versus revolution. Community-wide consideration of these governance issues will be timely and important before, during and following the OceanObs’19 meeting in September 2019

The Regulation of miRNA-211 Expression and Its Role in Melanoma Cell Invasiveness

The immediate molecular mechanisms behind invasive melanoma are poorly understood. Recent studies implicate microRNAs (miRNAs) as important agents in melanoma and other cancers. To investigate the role of miRNAs in melanoma, we subjected human melanoma cell lines to miRNA expression profiling, and report a range of variations in several miRNAs. Specifically, compared with expression levels in melanocytes, levels of miR-211 were consistently reduced in all eight non-pigmented melanoma cell lines we examined; they were also reduced in 21 out of 30 distinct melanoma samples from patients, classified as primary in situ, regional metastatic, distant metastatic, and nodal metastatic. The levels of several predicted target mRNAs of miR-211 were reduced in melanoma cell lines that ectopically expressed miR-211. In vivo target cleavage assays confirmed one such target mRNA encoded by KCNMA1. Mutating the miR-211 binding site seed sequences at the KCNMA1 3′-UTR abolished target cleavage. KCNMA1 mRNA and protein expression levels varied inversely with miR-211 levels. Two different melanoma cell lines ectopically expressing miR-211 exhibited significant growth inhibition and reduced invasiveness compared with the respective parental melanoma cell lines. An shRNA against KCNMA1 mRNA also demonstrated similar effects on melanoma cells. miR-211 is encoded within the sixth intron of TRPM1, a candidate suppressor of melanoma metastasis. The transcription factor MITF, important for melanocyte development and function, is needed for high TRPM1 expression. MITF is also needed for miR-211 expression, suggesting that the tumor-suppressor activities of MITF and/or TRPM1 may at least partially be due to miR-211's negative post transcriptional effects on the KCNMA1 transcript. Given previous reports of high KCNMA1 levels in metastasizing melanoma, prostate cancer and glioma, our findings that miR-211 is a direct posttranscriptional regulator of KCNMA1 expression as well as the dependence of this miRNA's expression on MITF activity, establishes miR-211 as an important regulatory agent in human melanoma

In-situ estimation of ice crystal properties at the South Pole using LED calibration data from the IceCube Neutrino Observatory

The IceCube Neutrino Observatory instruments about 1 km3 of deep, glacial ice at the geographic South Pole using 5160 photomultipliers to detect Cherenkov light emitted by charged relativistic particles. A unexpected light propagation effect observed by the experiment is an anisotropic attenuation, which is aligned with the local flow direction of the ice. Birefringent light propagation has been examined as a possible explanation for this effect. The predictions of a first-principles birefringence model developed for this purpose, in particular curved light trajectories resulting from asymmetric diffusion, provide a qualitatively good match to the main features of the data. This in turn allows us to deduce ice crystal properties. Since the wavelength of the detected light is short compared to the crystal size, these crystal properties do not only include the crystal orientation fabric, but also the average crystal size and shape, as a function of depth. By adding small empirical corrections to this first-principles model, a quantitatively accurate description of the optical properties of the IceCube glacial ice is obtained. In this paper, we present the experimental signature of ice optical anisotropy observed in IceCube LED calibration data, the theory and parametrization of the birefringence effect, the fitting procedures of these parameterizations to experimental data as well as the inferred crystal properties.</p

TXS 0506+056 with Updated IceCube Data

Past results from the IceCube Collaboration have suggested that the blazar TXS 0506+056 is a potential source of astrophysical neutrinos. However, in the years since there have been numerous updates to event processing and reconstruction, as well as improvements to the statistical methods used to search for astrophysical neutrino sources. These improvements in combination with additional years of data have resulted in the identification of NGC 1068 as a second neutrino source candidate. This talk will re-examine time-dependent neutrino emission from TXS 0506+056 using the most recent northern-sky data sample that was used in the analysis of NGC 1068. The results of using this updated data sample to obtain a significance and flux fit for the 2014 TXS 0506+056 "untriggered" neutrino flare are reported