Geometric control of bacterial surface accumulation

Controlling and suppressing bacterial accumulation at solid surfaces is essential for preventing biofilm formation and biofouling. Whereas various chemical surface treatments are known to reduce cell accumulation and attachment, the role of complex surface geometries remains less well understood. Here, we report experiments and simulations that explore the effects of locally varying boundary curvature on the scattering and accumulation dynamics of swimming Escherichia coli bacteria in quasi-two-dimensional microfluidic channels. Our experimental and numerical results show that a concave periodic boundary geometry can decrease the average cell concentration at the boundary by more than 50% relative to a flat surface.Comment: 10 pages, 5 figure

Vesicle dynamics in elongation flow: Wrinkling instability and bud formation

We present experimental results on the relaxation dynamics of vesicles subjected to a time-dependent elongation flow. We observed and characterized a new instability, which results in the formation of higher order modes of the vesicle shape (wrinkles), after a switch in the direction of the gradient of the velocity. This surprising generation of membrane wrinkles can be explained by the appearance of a negative surface tension during the vesicle deflation, due to compression in a sign-switching transient. Moreover, the formation of buds in the vesicle membrane has been observed in the vicinity of the dynamical transition point.Comment: 4 pages, 4 figure

Ciliary contact interactions dominate surface scattering of swimming eukaryotes

Interactions between swimming cells and surfaces are essential to many microbiological processes, from bacterial biofilm formation to human fertilization. However, in spite of their fundamental importance, relatively little is known about the physical mechanisms that govern the scattering of flagellated or ciliated cells from solid surfaces. A more detailed understanding of these interactions promises not only new biological insights into structure and dynamics of flagella and cilia, but may also lead to new microfluidic techniques for controlling cell motility and microbial locomotion, with potential applications ranging from diagnostic tools to therapeutic protein synthesis and photosynthetic biofuel production. Due to fundamental differences in physiology and swimming strategies, it is an open question whether microfluidic transport and rectification schemes that have recently been demonstrated for pusher-type microswimmers such as bacteria and sperm cells, can be transferred to puller-type algae and other motile eukaryotes, as it is not known whether long-range hydrodynamic or short-range mechanical forces dominate the surface interactions of these microorganisms. Here, using high-speed microscopic imaging, we present direct experimental evidence that the surface scattering of both mammalian sperm cells and unicellular green algae is primarily governed by direct ciliary contact interactions. Building on this insight, we predict and verify experimentally the existence of optimal microfluidic ratchets that maximize rectification of initially uniform Chlamydomonas reinhardtii suspensions. Since mechano-elastic properties of cilia are conserved across eukaryotic species, we expect that our results apply to a wide range of swimming microorganisms.Comment: Preprint as accepted for publication in PNAS, for published journal version (open access) and Supporting Information see http://dx.doi.org/10.1073/pnas.121054811

Dynamics of Vesicles in shear and rotational flows: Modal Dynamics and Phase Diagram

Despite the recent upsurge of theoretical reduced models for vesicle shape dynamics, comparisons with experiments have not been accomplished. We review the implications of some of the recently proposed models for vesicle dynamics, especially the Tumbling-Trembling domain regions of the phase plane and show that they all fail to capture the essential behavior of real vesicles for excess areas, \Delta, greater than 0.4. We emphasize new observations of shape harmonics and the role of thermal fluctuations.Comment: (removed forgotten leftover figure files

Fluid Velocity Fluctuations in a Suspension of Swimming Protists

In dilute suspensions of swimming microorganisms the local fluid velocity is a random superposition of the flow fields set up by the individual organisms, which in turn have multipole contributions decaying as inverse powers of distance from the organism. Here we show that the conditions under which the central limit theorem guarantees a Gaussian probability distribution function of velocities are satisfied when the leading force singularity is a Stokeslet, but are not when it is any higher multipole. These results are confirmed by numerical studies and by experiments on suspensions of the alga Volvox carteri, which show that deviations from Gaussianity arise from near-field effects.Comment: 4 pages, 3 figure

Particles held by springs in a linear shear flow exhibit oscillatory motion

The dynamics of small spheres, which are held by linear springs in a low Reynolds number shear flow at neighboring locations is investigated. The flow elongates the beads and the interplay of the shear gradient with the nonlinear behavior of the hydrodynamic interaction among the spheres causes in a large range of parameters a bifurcation to a surprising oscillatory bead motion. The parameter ranges, wherein this bifurcation is either super- or subcritical, are determined.Comment: 4 pages, 5 figure

Entrainment dominates the interaction of microalgae with micron-sized objects

The incessant activity of swimming microorganisms has a direct physical effect on surrounding microscopic objects, leading to enhanced diffusion far beyond the level of Brownian motion with possible influences on the spatial distribution of non-motile planktonic species and particulate drifters. Here we study in detail the effect of eukaryotic flagellates, represented by the green microalga Chlamydomonas reinhardtii, on microparticles. Macro- and micro-scopic experiments reveal that microorganism--colloid interactions are dominated by rare close encounters leading to large displacements through direct entrainment. Simulations and theoretical modelling show that the ensuing particle dynamics can be understood in terms of a simple jump-diffusion process, combining standard diffusion with Poisson-distributed jumps. This heterogeneous dynamics is likely to depend on generic features of the near-field of swimming microorganisms with front-mounted flagella

Bimodal rheotactic behavior reflects flagellar beat asymmetry in human sperm cells

Successful sperm navigation is essential for sexual reproduction, yet we still understand relatively little about how sperm cells are able to adapt their swimming motion in response to chemical and physical cues. This lack of knowledge is owed to the fact that it has been difficult to observe directly the full 3D dynamics of the whip-like flagellum that propels the cell through the fluid. To overcome this deficiency, we apply a new algorithm to reconstruct the 3D beat patterns of human sperm cells in experiments under varying flow conditions. Our analysis reveals that the swimming strokes of human sperm are considerably more complex than previously thought, and that sperm may use their heads as rudders to turn right or left.Swiss National Science Foundation (Grant 148743)Solomon Buchsbaum AT&T Research Fun