Deep Multi-Modal Classification of Intraductal Papillary Mucinous Neoplasms (IPMN) with Canonical Correlation Analysis

Pancreatic cancer has the poorest prognosis among all cancer types. Intraductal Papillary Mucinous Neoplasms (IPMNs) are radiographically identifiable precursors to pancreatic cancer; hence, early detection and precise risk assessment of IPMN are vital. In this work, we propose a Convolutional Neural Network (CNN) based computer aided diagnosis (CAD) system to perform IPMN diagnosis and risk assessment by utilizing multi-modal MRI. In our proposed approach, we use minimum and maximum intensity projections to ease the annotation variations among different slices and type of MRIs. Then, we present a CNN to obtain deep feature representation corresponding to each MRI modality (T1-weighted and T2-weighted). At the final step, we employ canonical correlation analysis (CCA) to perform a fusion operation at the feature level, leading to discriminative canonical correlation features. Extracted features are used for classification. Our results indicate significant improvements over other potential approaches to solve this important problem. The proposed approach doesn't require explicit sample balancing in cases of imbalance between positive and negative examples. To the best of our knowledge, our study is the first to automatically diagnose IPMN using multi-modal MRI.Comment: Accepted for publication in IEEE International Symposium on Biomedical Imaging (ISBI) 201

Dual Monte Carlo and Cluster Algorithms

We discuss the development of cluster algorithms from the viewpoint of probability theory and not from the usual viewpoint of a particular model. By using the perspective of probability theory, we detail the nature of a cluster algorithm, make explicit the assumptions embodied in all clusters of which we are aware, and define the construction of free cluster algorithms. We also illustrate these procedures by rederiving the Swendsen-Wang algorithm, presenting the details of the loop algorithm for a worldline simulation of a quantum $S=$ 1/2 model, and proposing a free cluster version of the Swendsen-Wang replica method for the random Ising model. How the principle of maximum entropy might be used to aid the construction of cluster algorithms is also discussed.Comment: 25 pages, 4 figures, to appear in Phys.Rev.

Multicanonical Multigrid Monte Carlo

To further improve the performance of Monte Carlo simulations of first-order phase transitions we propose to combine the multicanonical approach with multigrid techniques. We report tests of this proposition for the $d$-dimensional $\Phi^4$ field theory in two different situations. First, we study quantum tunneling for $d = 1$ in the continuum limit, and second, we investigate first-order phase transitions for $d = 2$ in the infinite volume limit. Compared with standard multicanonical simulations we obtain improvement factors of several resp. of about one order of magnitude.Comment: 12 pages LaTex, 1 PS figure appended. FU-Berlin preprint FUB-HEP 9/9

Transition matrix Monte Carlo method for quantum systems

We propose an efficient method for Monte Carlo simulation of quantum lattice models. Unlike most other quantum Monte Carlo methods, a single run of the proposed method yields the free energy and the entropy with high precision for the whole range of temperature. The method is based on several recent findings in Monte Carlo techniques, such as the loop algorithm and the transition matrix Monte Carlo method. In particular, we derive an exact relation between the DOS and the expectation value of the transition probability for quantum systems, which turns out to be useful in reducing the statistical errors in various estimates.Comment: 6 pages, 4 figure

Profile scaling in decay of nanostructures

The flattening of a crystal cone below its roughening transition is studied by means of a step flow model. Numerical and analytical analyses show that the height profile, h(r,t), obeys the scaling scenario dh/dr = F(r t^{-1/4}). The scaling function is flat at radii r<R(t) \sim t^{1/4}. We find a one parameter family of solutions for the scaling function, and propose a selection criterion for the unique solution the system reaches.Comment: 4 pages, RevTex, 3 eps figure

Impurity-induced diffusion bias in epitaxial growth

We introduce two models for the action of impurities in epitaxial growth. In the first, the interaction between the diffusing adatoms and the impurities is ``barrier''-like and, in the second, it is ``trap''-like. For the barrier model, we find a symmetry breaking effect that leads to an overall down-hill current. As expected, such a current produces Edwards-Wilkinson scaling. For the trap model, no symmetry breaking occurs and the scaling behavior appears to be of the conserved-KPZ type.Comment: 5 pages(with the 5 figures), latex, revtex3.0, epsf, rotate, multico

A micro-geoarchaeological view on stratigraphy and site formation processes in the Middle, Upper and Epi-Paleolithic layers of Sefunim Cave, Mt. Carmel, Israel

This paper presents a micro-geoarchaeological study carried out on the sedimentary sequence exposed at the entrance of Sefunim Cave, Israel, a sequence that spans from the Middle Paleolithic to the early Epipaleolithic periods. Using FTIR and micromorphological techniques, we investigated the stratigraphic sequence to reconstruct patterns of site use and archaeological formation processes. We identified formation processes that are common among Paleolithic caves sites in the Southern Levant, mainly the deposition of local terra rossa through colluvial sedimentation. Taphonomic disturbances of the deposits range from minimal to moderate, exhibited mainly by root and burrowing activity, but with no evidence for significant transport of archaeological materials. While the upper layers (II–III) are decalcified, the precipitation of secondary calcite results in increasing cementation of the sediments with depth in the lower layers (V–VII). We observed variation at the microscopic scale and identified an inverse correlation between human and carnivore activity throughout the layers. We observed human activity by the presence of micro-archaeological materials such as chert, bone, charcoal, rubified clay, burnt bone and shell, and wood ash. We observed carnivore activity by the presence of phosphatic grains and coprolite fragments as well as chewed and digested bones. We conclude that human activity at the site was characterized by episodes of varying intensity, based on the frequency of archaeological finds within the different layers. The alternating episodes of human and carnivore activity at Sefunim Cave may demonstrate the close-knit interactions and reciprocal relations that humans and carnivore shared at Paleolithic caves.publishedVersio