A single genomic region involving a putative chromosome rearrangement in flat oyster (Ostrea edulis) is associated with differential host resilience to the parasite Bonamia ostreae

European flat oyster (Ostrea edulis) is an ecologically and economically important marine bivalve, that has been severely affected by the intracellular parasite Bonamia ostreae. In this study, a flat oyster SNP array (~14,000 SNPs) was used to validate previously reported outlier loci for divergent selection associated with B. ostreae exposure in the Northeast Atlantic Area. A total of 134 wild and hatchery individuals from the North Sea, collected in naïve (NV) and long-term affected (LTA) areas, were analysed. Genetic diversity and differentiation were related to the sampling origin (wild vs. hatchery) when using neutral markers, and to bonamiosis status (NV vs. LTA) when using outlier loci for divergent selection. Two genetic clusters appeared intermingled in all sampling locations when using outlier loci, and their frequency was associated with their bonamiosis status. When both clusters were compared, outlier data sets showed high genetic divergence (FST > 0.25) unlike neutral loci (FST not ≠ 0). Moreover, the cluster associated with LTA samples showed much higher genetic diversity and significant heterozygote excess with outlier loci, but not with neutral data. Most outliers mapped on chromosome 8 (OE-C8) of the flat oyster genome, supporting a main genomic region underlying resilience to bonamiosis. Furthermore, differentially expressed genes previously reported between NV and LTA strains showed higher mapping density on OE-C8. A range of relevant immune functions were specifically enriched among genes annotated on OE-C8, providing hypotheses for resilience mechanisms to an intracellular parasite. The results suggest that marker-assisted selection could be applied to breed resilient strains of O. edulis to bonamiosis, if lower parasite load and/or higher viability of the LTA genetic cluster following B. ostreae infection is demonstratedBiotechnology and Biological Sciences Research Council. Grant Numbers: BBS/E/D/20002172, BB/S004181/1. Ministry of Agriculture, Nature and Food safety. Grant Numbers: BO43-18, KB33-004S

A single genomic region involving a putative chromosome rearrangement in flat oyster (Ostrea edulis) is associated with differential host resilience to the parasite Bonamia ostreae

European flat oyster (Ostrea edulis) is an ecologically and economically important marine bivalve, that has been severely affected by the intracellular parasite Bonamia ostreae. In this study, a flat oyster SNP array (~14,000 SNPs) was used to validate previously reported outlier loci for divergent selection associated with B. ostreae exposure in the Northeast Atlantic Area. A total of 134 wild and hatchery individuals from the North Sea, collected in naïve (NV) and long-term affected (LTA) areas, were analysed. Genetic diversity and differentiation were related to the sampling origin (wild vs. hatchery) when using neutral markers, and to bonamiosis status (NV vs. LTA) when using outlier loci for divergent selection. Two genetic clusters appeared intermingled in all sampling locations when using outlier loci, and their frequency was associated with their bonamiosis status. When both clusters were compared, outlier data sets showed high genetic divergence (FST > 0.25) unlike neutral loci (FST not ≠ 0). Moreover, the cluster associated with LTA samples showed much higher genetic diversity and significant heterozygote excess with outlier loci, but not with neutral data. Most outliers mapped on chromosome 8 (OE-C8) of the flat oyster genome, supporting a main genomic region underlying resilience to bonamiosis. Furthermore, differentially expressed genes previously reported between NV and LTA strains showed higher mapping density on OE-C8. A range of relevant immune functions were specifically enriched among genes annotated on OE-C8, providing hypotheses for resilience mechanisms to an intracellular parasite. The results suggest that marker-assisted selection could be applied to breed resilient strains of O. edulis to bonamiosis, if lower parasite load and/or higher viability of the LTA genetic cluster following B. ostreae infection is demonstratedBiotechnology and Biological Sciences Research Council. Grant Numbers: BBS/E/D/20002172, BB/S004181/1. Ministry of Agriculture, Nature and Food safety. Grant Numbers: BO43-18, KB33-004S

Salinity-Induced Extinction of <i>Zostera marina</i> in Lake Grevelingen? How Strong Habitat Modification May Require Introduction of a Suitable Ecotype

During the 1980s–1990s, 4600 hectares of the seagrass Zostera marina were permanently lost from Lake Grevelingen (the Netherlands), and restoration is planned. In 1971, the lake was fully marine (salinity 30), and seagrass covered 1300 hectares. After closure in that year, the lake gradually became brackish (salinity of 23 by 1978), and the meadows expanded to 4600 hectares. However, with the creation of a sluice connection to the sea in 1978, the lake returned to marine conditions and a fatal decline initiated. We revisit traditionally suggested causes of the disappearance of the seagrass, finding them unsatisfactory. We hypothesize that during the lower salinity conditions from 1971 to 1978, selection of low-salinity genotypes occurred, and these genotypes were not adapted to returning marine conditions. This hypothesis is no longer testable through genetic analysis in Lake Grevelingen but is supported by previously unpublished experiments that found a lack of seed germination at even moderately high salinity for the now extinct population. Such processes could be relevant for, and tested in, environmentally modified water systems worldwide, particularly when isolated. Based on our assessment, the abiotic environment of Lake Grevelingen seems suitable for Z. marina restoration using a donor from a high salinity environment

Groundwater effects on diversity and abundance of lagoonal seagrasses in Kenya and on Zanzibar Island (East Africa)

Seagrass species diversity and abundance were studied in East African back-reef lagoons with contrasting groundwater-outflow rates. The selection of the lagoons was based on a groundwater flow model. A total of 10 seagrass species was observed at all sites together. Sites with a higher groundwater outflow displayed a lower species diversity than sites with a lower groundwater outflow. Thalassodendron ciliatum dominated at sites with high groundwater outflow rates, while Thalassia hemprichii showed higher coverage at sites with low groundwater outflow. Porewater salinities were up to 5 psu lower at locations with predicted high groundwater-outflow rates indicating supply of freshwater. The reduction in porewater salinity at groundwater outflow sites is relatively low, which makes it unlikely that a difference in optimum salinity for growth is the main factor causing reduced diversity at these sites. Nitrogen-stable isotope signatures of seagrass leaves showed a significant increase with increased groundwater outflow rates. This suggests that the nitrogen source for these plants was, at least in part, groundwater. Differences in competition for nitrogen may explain the observed pattern in species diversity and abundance. To establish a substantive link between the observed reduced seagrass diversity or enhanced δ15N values of T. ciliatum leaves on the one hand and increased groundwater outflow rates on the other, further exploration through detailed measurements of groundwater outflow rates and groundwater nitrogen isotopic composition are needed.. This research is part of the GROFLO project which was supported by grant no. IC18-CT96-0065 of the Commission of the European Communities within the framework of the INCO Programme. This is NIOO-CEMO publication no. 2854Peer Reviewe

A single genomic region involving a putative chromosome rearrangement in flat oyster (Ostrea edulis) is associated with differential host resilience to the parasite Bonamia ostreae

European flat oyster (Ostrea edulis) is an ecologically and economically important marine bivalve, that has been severely affected by the intracellular parasite Bonamia ostreae. In this study, a flat oyster SNP array (~14,000 SNPs) was used to validate previously reported outlier loci for divergent selection associated with B. ostreae exposure in the Northeast Atlantic Area. A total of 134 wild and hatchery individuals from the North Sea, collected in naïve (NV) and long-term affected (LTA) areas, were analysed. Genetic diversity and differentiation were related to the sampling origin (wild vs hatchery) when using neutral markers, and to bonamiosis status (NV vs LTA) when using outlier loci for divergent selection. Two genetic clusters appeared intermingled in all sampling locations when using outlier loci and their frequency was associated with their bonamiosis status. When both clusters were compared, outlier datasets showed high genetic divergence (FST &gt; 0.25) unlike neutral loci (FST not ≠ 0). Moreover, the cluster associated with LTA samples showed much higher genetic diversity and significant heterozygote excess with outlier loci, but not with neutral data. Most outliers mapped on chromosome 8 (OE-C8) of the flat oyster genome, supporting a main genomic region underlying resilience to bonamiosis. Furthermore, differentially expressed genes previously reported between NV and LTA strains showed higher mapping density on OE-C8. A range of relevant immune functions were specifically enriched among genes annotated on OE-C8, providing hypotheses for resilience mechanisms to an intracellular parasite. The results suggest that marker-assisted selection could be applied to breed resilient strains of O. edulis to bonamiosis, if lower parasite load and/or higher viability of the LTA genetic cluster following B. ostreae infection is demonstrated