Ancient Microbes from Halite Fluid Inclusions: Optimized Surface Sterilization and DNA Extraction

Fluid inclusions in evaporite minerals (halite, gypsum, etc.) potentially preserve genetic records of microbial diversity and changing environmental conditions of Earth's hydrosphere for nearly one billion years. Here we describe a robust protocol for surface sterilization and retrieval of DNA from fluid inclusions in halite that, unlike previously published methods, guarantees removal of potentially contaminating surface-bound DNA. The protocol involves microscopic visualization of cell structures, deliberate surface contamination followed by surface sterilization with acid and bleach washes, and DNA extraction using Amicon centrifugal filters. Methods were verified on halite crystals of four different ages from Saline Valley, California (modern, 36 ka, 64 ka, and 150 ka), with retrieval of algal and archaeal DNA, and characterization of the algal community using ITS1 sequences. The protocol we developed opens up new avenues for study of ancient microbial ecosystems in fluid inclusions, understanding microbial evolution across geological time, and investigating the antiquity of life on earth and other parts of the solar system

Giant uranium deposits formed from exceptionally uranium-rich acidic brines

Giant uranium deposits were formed during the Mesoproterozoic era, 1.6-1.0 Gyr ago, in both Canada and Australia. The deposits are thought to have formed from large-scale circulation of brines at temperatures of 120-200 °C that percolated between sedimentary basins and underlying crystalline basement rocks. However, the precise conditions for transport of the uranium in these brines are poorly understood. Here we use mass spectrometry to analyse the uranium content of brines preserved in naturally occurring fluid inclusions in ore deposits from the Athabasca Basin, Canada. We measure concentrations of uranium in the range 1.0 × 10¯⁶-2.8 × 10¯³ moll¯¹. These concentrations are three orders of magnitude above any other common crustal fluids. Experimentally, we measure the solubility of uranium as a function of NaCl content and pH, in mixtures that are analogous to ore-forming brines at 155 °C. To account for the high uranium content observed in the Athabasca deposits, we find that the brines must have been acidic, with a pH between 2.5 and 4.5. Our results strongly suggest that the world's richest uranium deposits formed from highly concentrated uranium-bearing acidic brines. We conclude that these conditions are a necessary requirement for the formation of giant uranium deposits in relatively short periods of time of about 0.1-1 Myr, similar to other world-class deposits of lead-zinc and gold