A quantitative genetic approach to assess the evolutionary potential of a coastal marine fish to ocean acidification

Assessing the potential of marine organisms to adapt genetically to increasing oceanic CO2 levels requires proxies such as heritability of fitness-related traits under ocean acidification (OA). We applied a quantitative genetic method to derive the first heritability estimate of survival under elevated CO2 conditions in a metazoan. Specifically, we reared offspring, selected from a wild coastal fish population (Atlantic silverside, Menidia menidia), at high CO2 conditions (~2300 μatm) from fertilization to 15 days posthatch, which significantly reduced survival compared to controls. Perished and surviving offspring were quantitatively sampled and genotyped along with their parents, using eight polymorphic microsatellite loci, to reconstruct a parent–offspring pedigree and estimate variance components. Genetically related individuals were phenotypically more similar (i.e., survived similarly long at elevated CO2 conditions) than unrelated individuals, which translated into a significantly nonzero heritability (0.20 ± 0.07). The contribution of maternal effects was surprisingly small (0.05 ± 0.04) and nonsignificant. Survival among replicates was positively correlated with genetic diversity, particularly with observed heterozygosity. We conclude that early life survival of M. menidia under high CO2 levels has a significant additive genetic component that could elicit an evolutionary response to OA, depending on the strength and direction of future selection

Isolation of novel microsatellite loci in dwarf chameleons from KwaZulu-Natal province, South Africa and their cross-amplification in other Bradypodion species

A recently radiated clade of dwarf chameleon (genus Bradypodion) localised to central-southern KwaZulu- Natal province, South Africa is considered taxonomically problematic due to the observed discordance between morphology and genetics within and between its species. The clade is made up of two described species (B. melanocephalum- B. thamnobates) and possibly others-all of which are experiencing significant reductions in the quality and quantity of available habitat due to natural and anthropogenic factors. To better understand the effects past and present habitat fragmentation has had on gene flow, population structure, and genetic diversity within this clade, we developed seven new microsatellite markers for the B. melanocephalum-B. thamnobates complex, plus two markers for B. pumilum using an enrichment protocol. We tested these nine markers, along with eight markers previously designed for B. pumilum, for cross-species transferability across five species within the genus Bradypodion (B. melanocephalum, B. thamnobates, B. dracomonatum, B. sp. and B. pumilum). The number of alleles ranged from 1 to 29 with observed heterozygosities ranging from 0.00 to 1.00. Several loci did not meet HW expectations, but this may be a result of extreme demographic fluctuations that have been noted for these species. Ten loci were found to be polymorphic across all species examined, making them ideal for studies examining the population genetics of dwarf chameleons. © Springer Science+Business Media B.V. 2011

Genetic diversity and differentiation of the Western Leopard Toad (Sclerophrys pantherina) based on mitochondrial and microsatellite markers

Intraspecific genetic diversity provides the basis for evolutionary change and is therefore considered the most fundamental level of biodiversity. Mitochondrial DNA (mtDNA) and microsatellite loci are the markers most typically used in population-level studies; however, their patterns of genetic variation are not always congruent. This can result in different interpretations of the data, which can impact on management decisions, especially for threatened species. Consequently, in this study, we developed and analysed novel microsatellite markers for the Endangered Western Leopard Toad (WLT), Sclerophrys pantherina, and compared the results to previously published mtDNA data to compare the level of genetic diversity between the two molecular markers. The microsatellite evidence showed signs of a past bottleneck, yet relatively high levels of genetic diversity and low genetic differentiation between two sampling sites. In contrast, the mtDNA revealed moderate to low levels of diversity between sampling sites, and strong genetic differentiation. An explanation for the conflicting patterns may be that the current genetic signature, as depicted by the microsatellite data, is not yet reflected in the mitochondrial dataset; and, as such the data are depicting a timeline for genetic variation within the WLT. Both markers revealed important information about the two sampling sites, which can help inform conservation management of the species

Spatial and ontogenetic variation in growth of nursery-bound juvenile lemon sharks, Negaprion brevirostris: a comparison of two age-assigning techniques

We compared growth rates of the lemon shark, Negaprion brevirostris, from Bimini, Bahamas and the Marquesas Keys (MK), Florida using data obtained in a multi-year annual census. We marked new neonate and juvenile sharks with unique electronic identity tags in Bimini and in the MK we tagged neonate and juvenile sharks. Sharks were tagged with tiny, subcutaneous transponders, a type of tagging thought to cause little, if any disruption to normal growth patterns when compared to conventional external tagging. Within the first 2 years of this project, no age data were recorded for sharks caught for the first time in Bimini. Therefore, we applied and tested two methods of age analysis: ( 1) a modified 'minimum convex polygon' method and ( 2) a new age-assigning method, the 'cut-off technique'. The cut-off technique proved to be the more suitable one, enabling us to identify the age of 134 of the 642 previously unknown aged sharks. This maximised the usable growth data included in our analysis. Annual absolute growth rates of juvenile, nursery-bound lemon sharks were almost constant for the two Bimini nurseries and can be best described by a simple linear model ( growth data was only available for age-0 sharks in the MK). Annual absolute growth for age-0 sharks was much greater in the MK than in either the North Sound (NS) and Shark Land (SL) at Bimini. Growth of SL sharks was significantly faster during the first 2 years of life than of the sharks in the NS population. However, in MK, only growth in the first year was considered to be reliably estimated due to low recapture rates. Analyses indicated no significant differences in growth rates between males and females for any area

Coastal habitat use and residency of juvenile Atlantic sharpnose sharks (Rhizoprionodon terraenovae)

Coastal habitat use and residency of a coastal bay by juvenile Atlantic sharpnose sharks, Rhizoprionodon terraenovae, were examined by acoustic monitoring, gillnet sampling, and conventional tag–recapture. Acoustic monitoring data were used to define the residency and movement patterns of sharks within Crooked Island Sound, Florida. Over 3 years, sharks were monitored for periods of 1–37 days, with individuals regularly moving in and out of the study site. Individual sharks were continuously present within the study site for periods of 1–35 days. Patterns of movement could not be correlated with time of day. Home range sizes were typically small (average = 1.29 km2) and did not vary on a yearly basis. Gillnet sampling revealed that juvenile Atlantic sharpnose sharks were present in all habitat types found within Crooked Island Sound, and peaks in abundance varied depending on month within a year. Although telemetry data showed that most individuals remained within the study site for short periods of time before emigrating, conventional tag–recapture data indicates some individuals return to Crooked Island Sound after extended absences (maximum length = 1,352 days). Although conventional shark nursery theory suggests small sharks remain in shallow coastal waters to avoid predation, juvenile Atlantic sharpnose sharks frequently exited from protected areas and appear to move through deeper waters to adjacent coastal bays and estuaries. Given the high productivity exhibited by this species, the benefit gained through a nursery that reduces predation may be limited for this species