Efficient computation of the first passage time distribution of the generalized master equation by steady-state relaxation

The generalized master equation or the equivalent continuous time random walk equations can be used to compute the macroscopic first passage time distribution (FPTD) of a complex stochastic system from short-term microscopic simulation data. The computation of the mean first passage time and additional low-order FPTD moments can be simplified by directly relating the FPTD moment generating function to the moments of the local FPTD matrix. This relationship can be physically interpreted in terms of steady-state relaxation, an extension of steady-state flow. Moreover, it is amenable to a statistical error analysis that can be used to significantly increase computational efficiency. The efficiency improvement can be extended to the FPTD itself by modelling it using a Gamma distribution or rational function approximation to its Laplace transform

Vlasov Equation In Magnetic Field

The linearized Vlasov equation for a plasma system in a uniform magnetic field and the corresponding linear Vlasov operator are studied. The spectrum and the corresponding eigenfunctions of the Vlasov operator are found. The spectrum of this operator consists of two parts: one is continuous and real; the other is discrete and complex. Interestingly, the real eigenvalues are infinitely degenerate, which causes difficulty solving this initial value problem by using the conventional eigenfunction expansion method. Finally, the Vlasov equation is solved by the resolvent method.Comment: 15 page

Statistics of Entropy Production in Linearized Stochastic System

We consider a wide class of linear stochastic problems driven off the equilibrium by a multiplicative asymmetric force. The force brakes detailed balance, maintained otherwise, thus producing entropy. The large deviation function of the entropy production in the system is calculated explicitly. The general result is illustrated using an example of a polymer immersed in a gradient flow and subject to thermal fluctuations.Comment: 4 pages, 1 figur

Depolarization channels with zero-bandwidth noises

A simple model describing depolarization channels with zero-bandwidth environment is presented and exactly solved. The environment is modelled by Lorentzian, telegraphic and Gaussian zero-bandwidth noises. Such channels can go beyond the standard Markov dynamics and therefore can illustrate the influence of memory effects of the noisy communication channel on the transmitted information. To quantify the disturbance of quantum states the entanglement fidelity between arbitrary input and output states is investigated.Comment: 15 pages, 3 figure

Dynamic disorder in receptor-ligand forced dissociation experiments

Recently experiments showed that some biological noncovalent bonds increase their lifetimes when they are stretched by an external force, and their lifetimes will decrease when the force increases further. Several specific quantitative models have been proposed to explain the intriguing transitions from the "catch-bond" to the "slip-bond". Different from the previous efforts, in this work we propose that the dynamic disorder of the force-dependent dissociation rate can account for the counterintuitive behaviors of the bonds. A Gaussian stochastic rate model is used to quantitatively describe the transitions observed recently in the single bond P-selctin glycoprotein ligand 1(PSGL-1)$-$P-selectin force rupture experiment [Marshall, {\it et al.}, (2003) Nature {\bf 423}, 190-193]. Our model agrees well to the experimental data. We conclude that the catch bonds could arise from the stronger positive correlation between the height of the intrinsic energy barrier and the distance from the bound state to the barrier; classical pathway scenario or {\it a priori} catch bond assumption is not essential.Comment: 4 pages, 2 figure

Brownian rectifiers in the presence of temporally asymmetric unbiased forces

The efficiency of energy transduction in a temporally asymmetric rocked ratchet is studied. Time asymmetry favours current in one direction and suppresses it in the opposite direction due to which large efficiency ~ 50% is readily obtained. The spatial asymmetry in the potential together with system inhomogeneity may help in further enhancing the efficiency. Fine tuning of system parameters considered leads to multiple current reversals even in the adiabatic regime

Entropy Production of Brownian Macromolecules with Inertia

We investigate the nonequilibrium steady-state thermodynamics of single Brownian macromolecules with inertia under feedback control in isothermal ambient fluid. With the control being represented by a velocity-dependent external force, we find such open systems can have a negative entropy production rate and we develop a mesoscopic theory consistent with the second law. We propose an equilibrium condition and define a class of external forces, which includes a transverse Lorentz force, leading to equilibrium.Comment: 10 pages, 1 figur

Entanglement and Quantum Noise Due to a Thermal Bosonic Field

We analyze the indirect exchange interaction between two two-state systems, e.g., spins 1/2, subject to a common finite-temperature environment modeled by bosonic modes. The environmental modes, e.g., phonons or cavity photons, are also a source of quantum noise. We analyze the coherent vs noise-induced features of the two-spin dynamics and predict that for low enough temperatures the induced interaction is coherent over time scales sufficient to create entanglement. A nonperturbative approach is utilized to obtain an exact solution for the onset of the induced interaction, whereas for large times, a Markovian scheme is used. We identify the time scales for which the spins develop entanglement for various spatial separations. For large enough times, the initially created entanglement is erased by quantum noise. Estimates for the interaction and the level of quantum noise for localized impurity electron spins in Si-Ge type semiconductors are given.Comment: 12 pages, 9 figures; typos correcte

Generalization of escape rate from a metastable state driven by external cross-correlated noise processes

We propose generalization of escape rate from a metastable state for externally driven correlated noise processes in one dimension. In addition to the internal non-Markovian thermal fluctuations, the external correlated noise processes we consider are Gaussian, stationary in nature and are of Ornstein-Uhlenbeck type. Based on a Fokker-Planck description of the effective noise processes with finite memory we derive the generalized escape rate from a metastable state in the moderate to large damping limit and investigate the effect of degree of correlation on the resulting rate. Comparison of the theoretical expression with numerical simulation gives a satisfactory agreement and shows that by increasing the degree of external noise correlation one can enhance the escape rate through the dressed effective noise strength.Comment: 9 pages, 1 figur