4,255 research outputs found
Being Here Now: Perspectives of Preliminary Medicine Residents at the Epicenter of the COVID-19 Pandemic.
Government-Industry Cooperative Fisheries Research in the North Pacific under the MSFCMA
The National Marine Fisheries Service’s Alaska Fisheries Science Center (AFSC) has a long and successful history of conducting research in cooperation with the fishing industry. Many of the AFSC’s annual resource assessment surveys are carried out aboard chartered commercial vessels and the skill and experience of captains and crew are integral to the success of this work. Fishing companies have been contracted to provide vessels and expertise for many different types of research, including testing and evaluation of survey and commercial fishing gear and development of improved methods for estimating commercial catch quantity and composition. AFSC scientists have also participated in a number of industry-initiated research projects including development of selective fishing gears for bycatch reduction and evaluating and improving observer catch composition sampling. In this paper, we describe the legal and regulatory provisions for these types of cooperative work and present examples to illustrate the process and identify the requirements for successful cooperative research
Lost in translation: data integration tools meet the Semantic Web (experiences from the Ondex project)
More information is now being published in machine processable form on the
web and, as de-facto distributed knowledge bases are materializing, partly
encouraged by the vision of the Semantic Web, the focus is shifting from the
publication of this information to its consumption. Platforms for data
integration, visualization and analysis that are based on a graph
representation of information appear first candidates to be consumers of
web-based information that is readily expressible as graphs. The question is
whether the adoption of these platforms to information available on the
Semantic Web requires some adaptation of their data structures and semantics.
Ondex is a network-based data integration, analysis and visualization platform
which has been developed in a Life Sciences context. A number of features,
including semantic annotation via ontologies and an attention to provenance and
evidence, make this an ideal candidate to consume Semantic Web information, as
well as a prototype for the application of network analysis tools in this
context. By analyzing the Ondex data structure and its usage, we have found a
set of discrepancies and errors arising from the semantic mismatch between a
procedural approach to network analysis and the implications of a web-based
representation of information. We report in the paper on the simple methodology
that we have adopted to conduct such analysis, and on issues that we have found
which may be relevant for a range of similar platformsComment: Presented at DEIT, Data Engineering and Internet Technology, 2011
IEEE: CFP1113L-CD
Optimal Vertex Cover for the Small-World Hanoi Networks
The vertex-cover problem on the Hanoi networks HN3 and HN5 is analyzed with
an exact renormalization group and parallel-tempering Monte Carlo simulations.
The grand canonical partition function of the equivalent hard-core repulsive
lattice-gas problem is recast first as an Ising-like canonical partition
function, which allows for a closed set of renormalization group equations. The
flow of these equations is analyzed for the limit of infinite chemical
potential, at which the vertex-cover problem is attained. The relevant fixed
point and its neighborhood are analyzed, and non-trivial results are obtained
both, for the coverage as well as for the ground state entropy density, which
indicates the complex structure of the solution space. Using special
hierarchy-dependent operators in the renormalization group and Monte-Carlo
simulations, structural details of optimal configurations are revealed. These
studies indicate that the optimal coverages (or packings) are not related by a
simple symmetry. Using a clustering analysis of the solutions obtained in the
Monte Carlo simulations, a complex solution space structure is revealed for
each system size. Nevertheless, in the thermodynamic limit, the solution
landscape is dominated by one huge set of very similar solutions.Comment: RevTex, 24 pages; many corrections in text and figures; final
version; for related information, see
http://www.physics.emory.edu/faculty/boettcher
On implicational bases of closure systems with unique critical sets
We show that every optimum basis of a finite closure system, in D.Maier's
sense, is also right-side optimum, which is a parameter of a minimum CNF
representation of a Horn Boolean function. New parameters for the size of the
binary part are also established. We introduce a K-basis of a general closure
system, which is a refinement of the canonical basis of Duquenne and Guigues,
and discuss a polynomial algorithm to obtain it. We study closure systems with
the unique criticals and some of its subclasses, where the K-basis is unique. A
further refinement in the form of the E-basis is possible for closure systems
without D-cycles. There is a polynomial algorithm to recognize the D-relation
from a K-basis. Thus, closure systems without D-cycles can be effectively
recognized. While E-basis achieves an optimum in one of its parts, the
optimization of the others is an NP-complete problem.Comment: Presented on International Symposium of Artificial Intelligence and
Mathematics (ISAIM-2012), Ft. Lauderdale, FL, USA Results are included into
plenary talk on conference Universal Algebra and Lattice Theory, June 2012,
Szeged, Hungary 29 pages and 2 figure
Convex Independence in Permutation Graphs
A set C of vertices of a graph is P_3-convex if every vertex outside C has at
most one neighbor in C. The convex hull \sigma(A) of a set A is the smallest
P_3-convex set that contains A. A set M is convexly independent if for every
vertex x \in M, x \notin \sigma(M-x). We show that the maximal number of
vertices that a convexly independent set in a permutation graph can have, can
be computed in polynomial time
Approximately coloring graphs without long induced paths
It is an open problem whether the 3-coloring problem can be solved in
polynomial time in the class of graphs that do not contain an induced path on
vertices, for fixed . We propose an algorithm that, given a 3-colorable
graph without an induced path on vertices, computes a coloring with
many colors. If the input graph is
triangle-free, we only need many
colors. The running time of our algorithm is if the input
graph has vertices and edges
Percolation of satisfiability in finite dimensions
The satisfiability and optimization of finite-dimensional Boolean formulas
are studied using percolation theory, rare region arguments, and boundary
effects. In contrast with mean-field results, there is no satisfiability
transition, though there is a logical connectivity transition. In part of the
disconnected phase, rare regions lead to a divergent running time for
optimization algorithms. The thermodynamic ground state for the NP-hard
two-dimensional maximum-satisfiability problem is typically unique. These
results have implications for the computational study of disordered materials.Comment: 4 pages, 4 fig
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