Do the combination of multiparametric MRI-based radiomics and selected blood inflammatory markers predict the grade and proliferation in glioma patients?

PURPOSEWe aimed to explore whether multiparametric magnetic resonance imaging (MRI)-based radiomics combined with selected blood inflammatory markers could effectively predict the grade and proliferation in glioma patients.METHODSThis retrospective study included 152 patients histopathologically diagnosed with glioma. Stratified sampling was used to divide all patients into a training cohort (n=107) and a validation cohort (n=45) according to a ratio of 7:3, and five-fold repeat cross-validation was adopted in the training cohort. Multiparametric MRI and clinical parameters, including age, the neutrophil-lymphocyte ratio and red cell distribution width, were assessed. During image processing, image registration and gray normalization were conducted. A radiomics analysis was performed by extracting 1584 multiparametric MRI-based features, and the least absolute shrinkage and selection operator (LASSO) was applied to generate a radiomics signature for predicting grade and Ki-67 index in both training and validation cohorts. Statistical analysis included analysis of variance, Pearson correlation, intraclass correlation coefficient, multivariate logistic regression, Hosmer-Lemeshow test, and receiver operating characteristic (ROC) curve.RESULTSThe radiomics signature demonstrated good performance in both the training and validation cohorts, with areas under the ROC curve (AUCs) of 0.92, 0.91, and 0.94 and 0.94, 0.75, and 0.82 for differentiating between low and high grade gliomas, grade III and grade IV gliomas, and low Ki-67 and high Ki-67, respectively, and was better than the clinical model; the AUCs of the combined model were 0.93, 0.91, and 0.95 and 0.94, 0.76, and 0.80, respectively.CONCLUSIONBoth the radiomics signature and combined model showed high diagnostic efficacy and outperformed the clinical model. The clinical factors did not provide additional improvement in the prediction of the grade and proliferation index in glioma patients, but the stability was improved

Trade-Off between Hydraulic Safety and Efficiency in Plant Xylem and Its Influencing Factors

Forests are vital ecosystems that are increasingly threatened by environmental stress; exploring the possible trade-off between hydraulic safety and efficiency in plant xylem is crucial to understanding their environmental adaptation strategies. However, to date, there is no consensus whether such trade-offs exist among and within species. To better comprehend the mechanism of xylem water transport, in this review, we summarized previously published work on xylem hydraulic safety and efficiency trade-off from the inter-species, intra-species, and intra-tree perspectives and its influencing factors. We gathered data on xylem hydraulic safety and efficiency and their related anatomical traits, i.e., conduit diameter and inter-conduit pit membrane thickness, from a total of 653 plant species analyzed in 80 published papers. At the inter-species level, we confirmed that there is a weak hydraulic safety and efficiency trade-off. For gymnosperms and herbaceous species, the observed trade-off is stronger. At the intra-species level, the hydraulic safety and efficiency trade-off was found in individuals of the same species investigated in the literature. At the intra-tree level, there is a trade-off between hydraulic safety and efficiency for leaves, stems, and roots, and we confirmed the vessel widening hypothesis, i.e., vessel diameter in the outer wood increases from the top to the bottom of the tree. Additionally, pit membrane thickness increases as the tree height decreases, thus increasing the xylem hydraulic efficiency and affecting the trade-off. Finally, we discussed the environmental factors affecting the trade-off between hydraulic safety and efficiency in the xylem, such as plant habitats, temperature, rainfall, altitude, and soil. Further investigations of the bordered pit membrane from the three-dimensional perspective would be useful to understand the hydraulic safety and efficiency trade-off at the nanoscale

N-acetyl glucosamine improves intestinal mucosal barrier function in rat

Our study investigated the effect of N-acetylglucosamine (GlcNAc) on the intestinal mucosal barrier function in rats. Rats were randomly assigned into normal control group, diarrhea-predominant irritable bowel syndrome (IBS-D) group and GlcNAc group. IBS-D was introduced into the IBS-D group without any treatment. The GlcNAc group were treated with GlcNAc. Microvilli and tight junctions of intestinal epithelial cells were detected. The D-lactic acid level and diamine oxidase (DAO) activity in the serum were determined. Compared with normal rats, microvilli were sparsely distributed on the intestinal epithelial cells, the tight junction gap also widened, and D-lactic acid level and DAO activity were significantly higher in the IBS-D group. After GlcNAc treatment, the microscopic structure of the intestinal mucosa became largely normal, and the level of D-lactic acid and the DAO activity were lowered. In conclusion, GlcNAc can effectively improve the intestinal mucosal barrier dysfunction, perhaps through enhancing the cellular metabolism

Synthesis of conch-like layered carbon nanosheets by ball-milling assisted ultrasonic exfoliation for highly selective removal of Cd(II) from multiple water matrices

International audienceDevelopment of carbonaceous materials from biomass have attracted tremendous research interest because their intriguing physicochemical properties and promising applications. However, endowing them with precisely controlled morphologies remains a formidable challenge. Herein, oxygen-functionalized biomass-derived carbon-nanosheets (CNSs) framework was synthesized using ball-milling ultrasonic exfoliation for application to remove cadmium Cd(II) water matrices. The obtained CNSs showed remarkably higher surface area (368.9 m2 g-1), thickness-range (∼6-8 nm) pore size (10.58 than pristine carbon (PC) (10.126 g-1, 1-2 µm 2.13 nm, respectively). demonstrated adsorption capacity (545.76 mg superior reusability (removal efficiency maintained >91% after 10 cycles) excellent selectivity (Kd = 4.7 × 106 mL g−1). isotherm kinetics data were better fitted by Langmuir pseudo-second order models. High led 97.7% in presence Cu(II), Zn(II), Pb(II) Ni(II) ions. strong also evident complex matrices including tap water, groundwater (Cd(II) removal >99%) river (98.97%). experimental analyses indicate that electrostatic attraction complexation as the prominent mechanisms. Overall, this work illustrates an applicable strategy develop successful toxic metal

A review of crop residue-based biochar as an efficient adsorbent to remove trace elements from aquatic systems

International audienceCrop residue-based biochar (CRB) has shown great potential for removing trace elements (TEs) from aquatic matrices. Despite the increasing interest in this area, no review has focused specifically on the efficacy of CRB for TEs removal in aquatic environments. This comprehensive review examines the global TEs water contamination status with an emphasis on their sources, compositional metrics for crop residue feedstock (proximate, ultimate, and lignocellulosic properties), and the potential use of CRB for TEs removal in aquatic media. It also evaluates the factors that affect the ability of CRB to remove TEs, such as feedstock type, production conditions, water pH, background electrolytes, water temperature, CRB/water ratio, and underlying pollutant sorption mechanisms. This review also discusses the practical applications of CRB in real water samples and engineering considerations for designing CRB with improved physicochemical properties, treatment efficiencies, and regeneration abilities. Additionally, the cost-benefit and economic assessment of CRB, challenges, and future research directions related to CRB are highlighted to promote research on this sustainable source of biochar. By elucidating the prospects of CRB as an adsorbent, this review emphasizes the need for continued research on its practical implications for environmentally relevant pollutant concentrations. Crop residue-based biochar (CRB) emerged as a top-notch adsorbent for TEs in aquatic systems. The CRB adsorption potential depended on the experimental conditions. The application of CRB to real water samples highlights its potential on a larger scale. Engineer-designed CRB exhibits high treatment efficiencies and regeneration abilities

Mapping of Ppd-B1, a Major Candidate Gene for Late Heading on Wild Emmer Chromosome Arm 2BS and Assessment of Its Interactions with Early Heading QTLs on 3AL.

Wheat heading date is an important agronomic trait determining maturation time and yield. A set of common wheat (Triticum aestivum var. Chinese Spring; CS)-wild emmer (T. turgidum L. subsp. dicoccoides (TDIC)) chromosome arm substitution lines (CASLs) was used to identify and allocate QTLs conferring late or early spike emergence by examining heading date. Genetic loci accelerating heading were found on TDIC chromosome arms 3AL and 7BS, while loci delaying heading were located on 4AL and 2BS. To map QTLs conferring late heading on 2BS, F2 populations derived from two cross combinations of CASL2BS × CS and CASL3AL × CASL2BS were developed and each planted at two times, constituting four F2 mapping populations. Heading date varied continuously among individuals of these four populations, suggesting quantitative characteristics. A genetic map of 2BS, consisting of 23 SSR and one single-stranded conformation polymorphism (SSCP) marker(s), was constructed using these F2 populations. This map spanned a genetic length of 53.2 cM with average marker density of 2.3 cM. The photoperiod-sensitivity gene Ppd-B1 was mapped to chromosome arm 2BS as a SSCP molecular marker, and was validated as tightly linked to a major QTL governing late heading of CASL2BS in all mapping populations. A significant dominance by additive effect of Ppd-B1 with the LUX gene located on 3AL was also detected. CS had more copies of Ppd-B1 than CASL2BS, implying that increased copy number could elevate the expression of Ppd-1 in CS, also increasing expression of LUX and FT genes and causing CS to have an earlier heading date than CASL2BS in long days

Divergence and evolution of cotton bHLH proteins from diploid to allotetraploid

Abstract Background Polyploidy is considered a major driving force in genome expansion, yielding duplicated genes whose expression may be conserved or divergence as a consequence of polyploidization. Results We compared the genome sequences of tetraploid cotton (Gossypium hirsutum) and its two diploid progenitors, G. arboreum and G. raimondii, and found that the bHLH genes were conserved over the polyploidization. Oppositely, the expression of the homeolgous gene pairs was diversified. The biased homeologous proportion for bHLH family is significantly higher (64.6%) than the genome wide homeologous expression bias (40%). Compared with cacao (T. cacao), orthologous genes only accounted for a small proportion (41.7%) of whole cotton bHLHs family. The further Ks analysis indicated that bHLH genes underwent at least two distinct episodes of whole genome duplication: a recent duplication (1.0–60.0 million years ago, MYA, 0.005  60.0 MYA, 0.312 < Ks < 3.0). The old duplication event might have played a key role in the expansion of the bHLH family. Both recent and old duplicated pairs (68.8%) showed a divergent expression profile, indicating specialized functions. The expression diversification of the duplicated genes suggested it might be a universal feature of the long-term evolution of cotton. Conclusions Overview of cotton bHLH proteins indicated a conserved and divergent evolution from diploids to allotetraploid. Our results provided an excellent example for studying the long-term evolution of polyploidy