Using the ionospheric response to the solar eclipse on 20th March 2015 to detect spatial structure in the solar corona

Long-term variability has previously been observed in the relative magnitude of annual and semi-annual variations in the critical frequency (related to the peak electron concentration) of the ionospheric F2 layer (foF2). In this paper we investigate the global patterns in such variability by calculating the time varying power ratio of semi-annual to annual components seen in ionospheric foF2 data sequences from 77 ionospheric monitoring stations around the world. The temporal variation in power ratios observed at each station was then correlated with the same parameter calculated from similar epochs for the Slough/Chilton data set (for which there exists the longest continuous sequence of ionospheric data). This technique reveals strong regional variation in the data, which bears a striking similarity to the regional variation observed in long-term changes to the height of the ionospheric F2 layer. We argue that since both the height and peak density of the ionospheric F2 region are influenced by changes to thermospheric circulation and composition, the observed long-term and regional variability can be explained by such changes. In the absence of long-term measurements of thermospheric composition, detailed modelling work is required to investigate these processes

Finding Vulnerable Roads in Harford County

Final project for URSP688L: Planning Technologies (Fall 2018). University of Maryland, College Park.Climate change has induced more extreme weather in recent years and Harford County and the surrounding region has experienced more frequent and intense storms. Flooding in Harford County, caused by the increase in storms, generated many instances of roads washing out, which have caused severe damage and created unsafe driving conditions. The issue has necessitated considerable use of public resources. Unfortunately, county budgets are limited, and staff resources are thin. Mitigation is the most cost-effective tool to reduce damage and associated costs; therefore, the county requires a tool that can more effectively identify vulnerable roadway segments. By working with the PALS program at University of Maryland, College Park, the county has identified an opportunity to work proactively and better meet the road safety obligations of the Public Works Department and the Division of Highways. As part of the PALS program, the team used data processing tools and GIS mapping technology to help the county preserve their roadways. Through ongoing conversations, the county worked with the team to create a tool that meet their needs by identifying roads at risk. Vulnerable segments have been identified and prioritized so county staff can plan road reinforcement projects in a more cost-effective manner. Along with a map of identified at-risk road segments, the team has created an interactive web app that allows an in-depth of analysis of at-risk roads, a geodatabase with watershed and soil analysis, and a presentation that reviews key findings. This report reviews the background research, the GIS methods used, the results and their implications for the county, and suggestions for moving forward. The goal, as GIS technicians and community planners, is to serve the interests of the county by providing tools to better predict instances of road failure.Harford Count

Electrically Charged Sphalerons

We investigate the possibility that the Higgs sector of the Weinberg-Salam model admits the existence of electrically charged, sphaleron states. Evidence is provided through an asymptotic and numerical perturbative analysis about the uncharged sphaleron. By introducing a toy model in two dimensions we demonstrate that such electrically charged, unstable states can exist. Crucially, they can have a comparable mass to their uncharged counterparts and so may also play a role in electroweak baryogenesis, by opening up new channels for baryon number violating processes.Comment: 12 pages, 4 Postscript figure

Standing Genetic Variation in Contingency Loci Drives the Rapid Adaptation of Campylobacter jejuni to a Novel Host

The genome of the food-borne pathogen Campylobacter jejuni contains multiple highly mutable sites, or contingency loci. It has been suggested that standing variation at these loci is a mechanism for rapid adaptation to a novel environment, but this phenomenon has not been shown experimentally. In previous work we showed that the virulence of C. jejuni NCTC11168 increased after serial passage through a C57BL/6 IL-10-/- mouse model of campylobacteriosis. Here we sought to determine the genetic basis of this adaptation during passage. Re-sequencing of the 1.64Mb genome to 200-500X coverage allowed us to define variation in 23 contingency loci to an unprecedented depth both before and after in vivo adaptation. Mutations in the mouse-adapted C. jejuni were largely restricted to the homopolymeric tracts of thirteen contingency loci. These changes cause significant alterations in open reading frames of genes in surface structure biosynthesis loci and in genes with only putative functions. Several loci with open reading frame changes also had altered transcript abundance. The increase in specific phases of contingency loci during in vivo passage of C. jejuni, coupled with the observed virulence increase and the lack of other types of genetic changes, is the first experimental evidence that these variable regions play a significant role in C. jejuni adaptation and virulence in a novel host

Gravitational energy

Observers at rest in a stationary spacetime flat at infinity can measure small amounts of rest-mass+internal energies+kinetic energies+pressure energy in a small volume of fluid attached to a local inertial frame. The sum of these small amounts is the total "matter energy" for those observers. The total mass-energy minus the matter energy is the binding gravitational energy. Misner, Thorne and Wheeler evaluated the gravitational energy of a spherically symmetric static spacetime. Here we show how to calculate gravitational energy in any static and stationary spacetime for isolated sources with a set of observers at rest. The result of MTW is recovered and we find that electromagnetic and gravitational 3-covariant energy densities in conformastatic spacetimes are of opposite signs. Various examples suggest that gravitational energy is negative in spacetimes with special symmetries or when the energy-momentum tensor satisfies usual energy conditions.Comment: 12 pages. Accepted for publication in Class. Quantum Gra

Children's daily travel to school in Johannesburg-Soweto, South Africa: geography and school choice in the Birth to Twenty cohort study

This paper has two aims: to explore approaches to the measurement of children’s daily travel to school in a context of limited geospatial data availability, and to provide data regarding school choice and distance travelled to school in Soweto-Johannesburg, South Africa. The paper makes use of data from the Birth to Twenty cohort study (n=1428) to explore three different approaches to estimating school choice and travel to school. Firstly, straight-line distance between home and school is calculated. Secondly, census geography is used to determine whether a child's home and school fall in the same area. Thirdly, distance data are used to determine whether a child attends the nearest school. Each of these approaches highlights a different aspect of mobility, and all provide valuable data. Overall, primary school aged children in Soweto-Johannesburg are shown to be travelling substantial distances to school on a daily basis. Over a third travel more than 3km, one-way, to school, 60% attend schools outside of the suburb in which they live, and only 18% attend their nearest school. These data provide evidence for high levels of school choice in Johannesburg-Soweto, and that families and children are making substantial investments in pursuit of high quality educational opportunities. Additionally, these data suggest that two patterns of school choice are evident: one pattern involving travel of substantial distances and requiring a higher level of financial investment, and a second pattern, involving choice between more local schools, requiring less travel and a more limited financial investment

The effect of surveillance and appreciative inquiry on puerperal infections : a longitudinal cohort study in India

Peer reviewedPublisher PD

DNA fragility in the parallel evolution of pelvic reduction in stickleback fish

Evolution generates a remarkable breadth of living forms, but many traits evolve repeatedly, by mechanisms that are still poorly understood. A classic example of repeated evolution is the loss of pelvic hindfins in stickleback fish (Gasterosteus aculeatus). Repeated pelvic loss maps to recurrent deletions of a pelvic enhancer of the Pitx1 gene. Here, we identify molecular features contributing to these recurrent deletions. Pitx1 enhancer sequences form alternative DNA structures in vitro and increase double-strand breaks and deletions in vivo. Enhancer mutability depends on DNA replication direction and is caused by TG-dinucleotide repeats. Modeling shows that elevated mutation rates can influence evolution under demographic conditions relevant for sticklebacks and humans. DNA fragility may thus help explain why the same loci are often used repeatedly during parallel adaptive evolution

The burden of diabetes mellitus during pregnancy in low- and middle-income countries : a systematic review

Peer reviewedPublisher PD

Multiple factors interact to produce responses resembling spectrum of human disease in Campylobacter jejuni infected C57BL/6 IL-10-/- mice

<p>Abstract</p> <p>Background</p> <p><it>Campylobacter jejuni </it>infection produces a spectrum of clinical presentations in humans – including asymptomatic carriage, watery diarrhea, and bloody diarrhea – and has been epidemiologically associated with subsequent autoimmune neuropathies. This microorganism is genetically variable and possesses genetic mechanisms that may contribute to variability in nature. However, relationships between genetic variation in the pathogen and variation in disease manifestation in the host are not understood. We took a comparative experimental approach to explore differences among different <it>C. jejuni </it>strains and studied the effect of diet on disease manifestation in an interleukin-10 deficient mouse model.</p> <p>Results</p> <p>In the comparative study, C57BL/6 interleukin-10^-/-mice were infected with seven genetically distinct <it>C. jejuni </it>strains. Four strains colonized the mice and caused disease; one colonized with no disease; two did not colonize. A DNA:DNA microarray comparison of the strain that colonized mice without disease to <it>C. jejuni </it>11168 that caused disease revealed that putative virulence determinants, including loci encoding surface structures known to be involved in <it>C. jejuni </it>pathogenesis, differed from or were absent in the strain that did not cause disease. In the experimental study, the five colonizing strains were passaged four times in mice. For three strains, serial passage produced increased incidence and degree of pathology and decreased time to develop pathology; disease shifted from watery to bloody diarrhea. Mice kept on an ~6% fat diet or switched from an ~12% fat diet to an ~6% fat diet just before infection with a non-adapted strain also exhibited increased incidence and severity of disease and decreased time to develop disease, although the effects of diet were only statistically significant in one experiment.</p> <p>Conclusion</p> <p><it>C. jejuni </it>strain genetic background and adaptation of the strain to the host by serial passage contribute to differences in disease manifestations of <it>C. jejuni </it>infection in C57BL/6 IL-10^-/-mice; differences in environmental factors such as diet may also affect disease manifestation. These results in mice reflect the spectrum of clinical presentations of <it>C. jejuni </it>gastroenteritis in humans and contribute to usefulness of the model in studying human disease.</p