String effects in SU(2) lattice gauge theory

We discuss the effective string picture for the confining regime of lattice gauge theories at zero and finite temperature. We present results of extensive Monte Carlo simulations - performed with the Luscher and Weisz algorithm - for SU(2) Yang-Mills theory in 2+1 dimensions. We also address the issue of "string universality" by comparing our results with those obtained in other lattice gauge theories.Comment: 3 pages, 2 figures, Lattice2003(topology

The static potential: lattice versus perturbation theory in a renormalon-based approach

We compare, for the static potential and at short distances, perturbation theory with the results of lattice simulations. We show that a renormalon-dominance picture explains why in the literature sometimes agreement, and another disagreement, is found between lattice simulations and perturbation theory depending on the different implementations of the latter. We also show that, within a renormalon-based scheme, perturbation theory agrees with lattice simulations.Comment: 18 pages, 11 figures, lattice data of Necco and Sommer introduced, references added, some lengthier explanations given, physical results unchange

Absence of evidence for pentaquarks on the lattice

We study the question of whether or not QCD predicts a pentaquark state. We use the improved, fixed point lattice QCD action which has very little sensitivity to the lattice spacing and also allows us to reach light quark masses. The analysis was performed on a single volume of size $(1.8 {\rm fm})^3\times 3.6 {\rm fm}$ with lattice spacing of $a=0.102$ fm. We use the correlation matrix method to identify the ground and excited states in the isospin 0, negative parity channel. In the quenched approximation where dynamical quark effects are omitted, we do not find any evidence for a pentaquark resonance in QCD.Comment: 17 pages, 5 figures replaced with revised versio

Static quark potential and effective string corrections in the (2+1)-d SU(2) Yang-Mills theory

We report on a very accurate measurement of the static quark potential in SU(2) Yang-Mills theory in (2+1) dimensions in order to study the corrections to the linear behaviour. We perform numerical simulations at zero and finite temperature comparing our results with the corrections given by the effective string picture in these two regimes. We also check for universal features discussing our results together with those recently published for the (2+1)-d Z(2) and SU(3) pure gauge theories.Comment: 29 pages, 6 figure

The Polyakov Loop and its Relation to Static Quark Potentials and Free Energies

It appears well accepted in the literature that the correlator of Polyakov loops in a finite temperature system decays with the "average" free energy of the static quark-antiquark system, and can be decomposed into singlet and adjoint (or octet for QCD) contributions. By fixing a gauge respecting the transfer matrix, attempts have been made to extract those contributions separately. In this paper we point out that the "average" and "adjoint" channels of Polyakov loop correlators are misconceptions. We show analytically that all channels receive contributions from singlet states only, and give a corrected definition of the singlet free energy. We verify this finding by simulations of the 3d SU(2) pure gauge theory in the zero temperature limit, which allows to cleanly extract the ground state exponents and the non-trivial matrix elements. The latter account for the difference between the channels observed in previous simulations.Comment: 14 pages, 3 figures, 1 table; note and reference adde

Probing the 5th Dimension with the QCD String

A salient feature of String/Gauge duality is an extra 5th dimension. Here we study the effect of confining deformations of AdS5 and compute the spectrum of a string stretched between infinitely massive quarks and compare it with the quantum states of the QCD flux as determined by Kuti, Juge and Morningstar in lattice simulations. In the long flux tube limit the AdS string probes the metric near the IR cutoff of the 5th dimension with a spectrum approximated by a Nambu-Goto string in 4-d flat space, whereas at short distance the string moves to the UV region with a discrete spectrum for pure AdS5. We also review earlier results on glueballs states and the cross-over between hard and soft diffractive scattering that support this picture.Comment: 12 pages, 4 figures, invited talk by Brower and Tan at the Eighth Workshop on Non-Perturbative Quantum Chromodynamcis, June (2004

Potential model calculations and predictions for heavy quarkonium

We investigate the spectroscopy and decays of the charmonium and upsilon systems in a potential model consisting of a relativistic kinetic energy term, a linear confining term including its scalar and vector relativistic corrections and the complete perturbative one-loop quantum chromodynamic short distance potential. The masses and wave functions of the various states are obtained using a variational technique, which allows us to compare the results for both perturbative and nonperturbative treatments of the potential. As well as comparing the mass spectra, radiative widths and leptonic widths with the available data, we include a discussion of the errors on the parameters contained in the potential, the effect of mixing on the leptonic widths, the Lorentz nature of the confining potential and the possible $c\bar{c}$ interpretation of recently discovered charmonium-like states.Comment: Physical Review published versio

The pan-genome of Lactobacillus reuteri strains originating from the pig gastrointestinal tract

Background Lactobacillus reuteri is a gut symbiont of a wide variety of vertebrate species that has diversified into distinct phylogenetic clades which are to a large degree host-specific. Previous work demonstrated host specificity in mice and begun to determine the mechanisms by which gut colonisation and host restriction is achieved. However, how L. reuteri strains colonise the gastrointestinal (GI) tract of pigs is unknown. Results To gain insight into the ecology of L. reuteri in the pig gut, the genome sequence of the porcine small intestinal isolate L. reuteri ATCC 53608 was completed and consisted of a chromosome of 1.94 Mbp and two plasmids of 138.5 kbp and 9.09 kbp, respectively. Furthermore, we generated draft genomes of four additional L. reuteri strains isolated from pig faeces or lower GI tract, lp167-67, pg-3b, 20-2 and 3c6, and subjected all five genomes to a comparative genomic analysis together with the previously completed genome of strain I5007. A phylogenetic analysis based on whole genomes showed that porcine L. reuteri strains fall into two distinct clades, as previously suggested by multi-locus sequence analysis. These six pig L. reuteri genomes contained a core set of 1364 orthologous gene clusters, as determined by OrthoMCL analysis, that contributed to a pan-genome totalling 3373 gene clusters. Genome comparisons of the six pig L. reuteri strains with 14 L. reuteri strains from other host origins gave a total pan-genome of 5225 gene clusters that included a core genome of 851 gene clusters but revealed that there were no pig-specific genes per se. However, genes specific for and conserved among strains of the two pig phylogenetic lineages were detected, some of which encoded cell surface proteins that could contribute to the diversification of the two lineages and their observed host specificity. Conclusions This study extends the phylogenetic analysis of L. reuteri strains at a genome-wide level, pointing to distinct evolutionary trajectories of porcine L. reuteri lineages, and providing new insights into the genomic events in L. reuteri that occurred during specialisation to their hosts. The occurrence of two distinct pig-derived clades may reflect differences in host genotype, environmental factors such as dietary components or to evolution from ancestral strains of human and rodent origin following contact with pig populations

The spectrum of radial, orbital and gluonic excitations of charmonium

We present results for the charmonium spectrum from $N_f=2$ dynamical QCD simulations on $12^3\times 80$ anisotropic lattices. Using all-to-all propagators we determine the ground and excited states of S, P and D waves and hybrids. We also evaluate the disconnected (OZI suppressed) contribution to the $\eta_c$ and $J/\Psi$Comment: 6 pages, 3 figures, Presented at 24th International Symposium on Lattice Field Theory (Lattice 2006), Tucson, Arizona, 23-28 Jul 200