Comparisons between sequenced and re-sequenced genomes of historical subterranean clover mottle virus isolates

We report comparisons between the complete genomic sequences of five historical Western Australian isolates of subterranean clover mottle virus (SCMoV) from 1989–2000, and an infectious clone of its 1989 isolate. Sanger Sequencing (SS) and High Throughput Sequencing (HTS), or both, were used to obtain these genomes. Four of the SCMoV isolates were sequenced by SS in 1999–2002, but re-sequenced again by HTS in 2020. The pairs of sequences obtained from these four isolates differed by only 18–59 nucleotides. This small difference resulted from the different sequencing methods, the < 1–5 years each isolate was host passaged before freeze-drying prior to HTS sequencing, or a combination of both. Since SCMoV has not been reported outside Australia, this similarity suggests the population sequenced represents the progeny of either an indigenous virus that spread from a native legume to subterranean clover after its introduction or a recent seed-borne incursion from elsewhere. The ORF1 was the most variable, and the phylogenetic tree constructed with ORF1s showed the isolates grouped according to their symptom severity in subterranean clover, indicating the probability that ORF1-encoded P1 protein is a symptom determinant. A satellite RNA was associated with all SCMoV genomes obtained by HTS but none derived by SS

Laboratory capture, isolation and analysis of microparticles in aerogel: Preparation for the return of Stardust

We present observations from the laboratory capture of particles in aerogel. The paper focuses on a possible extraction technique and the bulk mineral characterization of the captured material using non-destructive analytical techniques

MC decomposition and boride formation in a next generation polycrystalline Ni based superalloy during isothermal exposure at 900 °C

Detailed microstructural characterisation of phases present in a next generation polycrystalline Ni based superalloy after thermal exposure at 900 °C was carried out, focusing on carbides and borides. Metastable M5B3 precipitated after 32 h had a stoichiometry of (Cr0.7Mo0.2W0.1)5B3 with substitutions with Ni, Co, Nb and Ta. Fine M23C6 (a = 10.62 Å) was overgrown by metastable M5B3, as shown by rigorous TEM-SAD pattern investigation. The borides were eventually dominated by Mo rich M3B2, at the apparent expense of MC. Decomposition of MC was confirmed; it transformed sequentially to γ and then γ΄. The primary driving force for the MC decomposition was attributed to γ΄ precipitation, increasing its fraction to the thermodynamic equilibrium at 900 °C

Spiders for rank 2 Lie algebras

A spider is an axiomatization of the representation theory of a group, quantum group, Lie algebra, or other group or group-like object. We define certain combinatorial spiders by generators and relations that are isomorphic to the representation theories of the three rank two simple Lie algebras, namely A2, B2, and G2. They generalize the widely-used Temperley-Lieb spider for A1. Among other things, they yield bases for invariant spaces which are probably related to Lusztig's canonical bases, and they are useful for computing quantities such as generalized 6j-symbols and quantum link invariants.Comment: 33 pages. Has color figure

Structure factor measurement in TiAl and silicon

It proved impossible to obtain results with sufficient precision for TiAl reproducibly (<0.1%) from samples of different thicknesses. In order to ascertain the origin of this inconsistency, this study concentrates on the development of the experimental and theoretical tools required for such refinement and measurements for Si have been performed

Localized spin ordering in Kondo lattice models

Using a non-Abelian density matrix renormalization group method we determine the phase diagram of the Kondo lattice model in one dimension, by directly measuring the magnetization of the ground-state. This allowed us to discover a second ferromagnetic phase missed in previous approaches. The phase transitions are found to be continuous. The spin-spin correlation function is studied in detail, and we determine in which regions the large and small Fermi surfaces dominate. The importance of double-exchange ordering and its competition with Kondo singlet formation is emphasized in understanding the complexity of the model.Comment: Revtex, 4 pages, 4 eps figures embedde