Keck Spectroscopy of Gravitationally Lensed z=4 Galaxies: Improved Constraints on the Escape Fraction of Ionizing Photons

The fraction of ionizing photons that escape from young star-forming galaxies is one of the largest uncertainties in determining the role of galaxies in cosmic reionization. Yet traditional techniques for measuring this fraction are inapplicable at the redshifts of interest due to foreground screening by the Lyman alpha forest. In an earlier study, we demonstrated a reduction in the equivalent width of low-ionization absorption lines in composite spectra of Lyman break galaxies at z=4 compared to similar measures at z=3. This might imply a lower covering fraction of neutral gas and hence an increase with redshift in the escape fraction of ionizing photons. However, our spectral resolution was inadequate to differentiate between several alternative explanations, including changes with redshift in the outflow kinematics. Here we present higher quality spectra of 3 gravitationally lensed Lyman break galaxies at z=4 with a spectral resolution sufficient to break this degeneracy of interpretation. We present a method for deriving the covering fraction of low-ionization gas as a function of outflow velocity and compare the results with similar quality data taken for galaxies at lower redshift. We find a significant trend of lower covering fractions of low-ionization gas for galaxies with strong \Lya emission. In combination with the demographic trends of \Lya emission with redshift from our earlier work, our results provide new evidence for a reduction in the average H I covering fraction, and hence an increase in the escape fraction of ionizing radiation from Lyman break galaxies, with redshift.Comment: submitted to Ap

Cholesterol dependence of HTLV-I infection

Cholesterol-rich plasma membrane microdomains are important for entry of many viruses, including retro-viruses. Depletion of cholesterol with 2-hydroxypropyl-β-cyclodextrin inhibits entry of human T cell leukemia virus type I (HTLV-1) and HTLV-I envelope pseudotyped lentivirus particles. Using a soluble fusion protein of the HTLV-I surface envelope protein with the immunoglobulin Fc domain, the HTLV-I receptor was found to colocalize with a raft-associated marker and to cluster in specific plasma membrane microdomains. Depletion of cholesterol did not alter receptor binding activity, suggesting a requirement for cholesterol in a postbinding virus entry step

Towards global data products of Essential Biodiversity Variables on species traits

Essential Biodiversity Variables (EBVs) allow observation and reporting of global biodiversity change, but a detailed framework for the empirical derivation of specific EBVs has yet to be developed. Here, we re-examine and refine the previous candidate set of species traits EBVs and show how traits related to phenology, morphology, reproduction, physiology and movement can contribute to EBV operationalization. The selected EBVs express intra-specific trait variation and allow monitoring of how organisms respond to global change. We evaluate the societal relevance of species traits EBVs for policy targets and demonstrate how open, interoperable and machine-readable trait data enable the building of EBV data products. We outline collection methods, meta(data) standardization, reproducible workflows, semantic tools and licence requirements for producing species traits EBVs. An operationalization is critical for assessing progress towards biodiversity conservation and sustainable development goals and has wide implications for data-intensive science in ecology, biogeography, conservation and Earth observation

A spectrum of physics-informed Gaussian processes for regression in engineering

Despite the growing availability of sensing and data in general, we remain unable to fully characterise many in-service engineering systems and structures from a purely data-driven approach. The vast data and resources available to capture human activity are unmatched in our engineered world, and, even in cases where data could be referred to as ``big,'' they will rarely hold information across operational windows or life spans. This paper pursues the combination of machine learning technology and physics-based reasoning to enhance our ability to make predictive models with limited data. By explicitly linking the physics-based view of stochastic processes with a data-based regression approach, a spectrum of possible Gaussian process models are introduced that enable the incorporation of different levels of expert knowledge of a system. Examples illustrate how these approaches can significantly reduce reliance on data collection whilst also increasing the interpretability of the model, another important consideration in this context

Intra-Rater and Inter-Rater Reliability of Pressure Pain Algometry of the Sural and Tibial Nerves in Asymptomatic Elite Youth Footballers

Ankle injuries are highly prevalent in elite youth footballers and increase the mechanosensitivity of the local neural tissue, which may predispose athletes to re-injury and prolong rehabilitation periods. Increased neural mechanosensitivity presents clinically as altered pain pressure thresholds (PPTs) which are measured with pressure algometry. The purpose of this study was to determine the intra-rater and inter-rater reliability of PPTs of the ankle neural tissue in asymptomatic elite youth football players. Three raters utilised a digital algometer to evaluate the PPTs of the Sural and Tibial nervous tissue at the ankle of elite youth male footballers. Intraclass correlation coefficients (ICCs) with 95% confidence intervals (CI) were calculated to assess intra-rater and inter-rater reliability and Bland–Altman figures were plotted to enable visual evaluation of measurement error with a significance level of p < 0.05. Thirty-four players (16–18 years old) were assessed. Excellent intra-rater (Tibial ICC 0.88 (0.76–0.94); Sural ICC 0.89 (0.79–0.95)) and good inter-rater reliability (Tibial ICC 0.66 (0.40–0.82); Sural 0.71 (0.50–0.85)) was demonstrated. Bland–Altman plots demonstrated low levels of measurement error. Pressure algometry can be utilised clinically to accurately evaluate the PPTs of the Tibial and Sural nervous tissue at the ankle in asymptomatic elite male youth footballers

Radiocarbon age-offsets in an arctic lake reveal the long-term response of permafrost carbon to climate change

Author Posting. © American Geophysical Union, 2014. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research: Biogeosciences 119 (2014): 1630–1651, doi:10.1002/2014JG002688.Continued warming of the Arctic may cause permafrost to thaw and speed the decomposition of large stores of soil organic carbon (OC), thereby accentuating global warming. However, it is unclear if recent warming has raised the current rates of permafrost OC release to anomalous levels or to what extent soil carbon release is sensitive to climate forcing. Here we use a time series of radiocarbon age-offsets (14C) between the bulk lake sediment and plant macrofossils deposited in an arctic lake as an archive for soil and permafrost OC release over the last 14,500 years. The lake traps and archives OC imported from the watershed and allows us to test whether prior warming events stimulated old carbon release and heightened age-offsets. Today, the age-offset (2 ka; thousand of calibrated years before A.D. 1950) and the depositional rate of ancient OC from the watershed into the lake are relatively low and similar to those during the Younger Dryas cold interval (occurring 12.9–11.7 ka). In contrast, age-offsets were higher (3.0–5.0 ka) when summer air temperatures were warmer than present during the Holocene Thermal Maximum (11.7–9.0 ka) and Bølling-Allerød periods (14.5–12.9 ka). During these warm times, permafrost thaw contributed to ancient OC depositional rates that were ~10 times greater than today. Although permafrost OC was vulnerable to climate warming in the past, we suggest surface soil organic horizons and peat are presently limiting summer thaw and carbon release. As a result, the temperature threshold to trigger widespread permafrost OC release is higher than during previous warming events.National Science Foundation. Grant Number: ARC-09021692015-02-2

anti-Tricyclo­[4.2.1.12,5]deca-3,7-diene-9,10-dione

The title compound, C10H8O2, is a precursor to an unusual bis-homoaromatic dication and to heterodiamantanes and other oxa-cage compounds. Two independent mol­ecules, each of which is situated on a center of symmetry, comprise the unit cell. Both mol­ecules are in nearly identical chair conformations