Cell and molecular transitions during efficient dedifferentiation

Dedifferentiation is a critical response to tissue damage, yet is not well understood, even at a basic phenomenological level. Developing Dictyostelium cells undergo highly efficient dedifferentiation, completed by most cells within 24 hr. We use this rapid response to investigate the control features of dedifferentiation, combining single cell imaging with high temporal resolution transcriptomics. Gene expression during dedifferentiation was predominantly a simple reversal of developmental changes, with expression changes not following this pattern primarily associated with ribosome biogenesis. Mutation of genes induced early in dedifferentiation did not strongly perturb the reversal of development. This apparent robustness may arise from adaptability of cells: the relative temporal ordering of cell and molecular events was not absolute, suggesting cell programmes reach the same end using different mechanisms. In addition, although cells start from different fates, they rapidly converged on a single expression trajectory. These regulatory features may contribute to dedifferentiation responses during regeneration

Privacy, Anonymity, and Big Data in the Social Sciences

Quality social science research and the privacy of human subjects require trust

The recovery of plant community composition following passive restoration across spatial scales

Human impacts have led to dramatic biodiversity change which can be highly scale-dependent across space and time. A primary means to manage these changes is via passive (here, the removal of disturbance) or active (management interventions) ecological restoration. The recovery of biodiversity, following the removal of disturbance, is often incomplete relative to some kind of reference target. The magnitude of recovery of ecological systems following disturbance depends on the landscape matrix and many contingent factors. Inferences about recovery after disturbance and biodiversity change depend on the temporal and spatial scales at which biodiversity is measured. We measured the recovery of biodiversity and species composition over 33 years in 17 temperate grasslands abandoned after agriculture at different points in time, collectively forming a chronosequence since abandonment from 1 to 80 years. We compare these abandoned sites with known agricultural land-use histories to never-disturbed sites as relative benchmarks. We specifically measured aspects of diversity at the local plot-scale (α-scale, 0.5 m2) and site-scale (γ-scale, 10 m2), as well as the within-site heterogeneity (β-diversity) and among-site variation in species composition (turnover and nestedness). At our α-scale, sites recovering after agricultural abandonment only had 70% of the plant species richness (and ~30% of the evenness), compared to never-ploughed sites. Within-site β-diversity recovered following agricultural abandonment to around 90% after 80 years. This effect, however, was not enough to lead to recovery at our γ-scale. Richness in recovering sites was ~65% of that in remnant never-ploughed sites. The presence of species characteristic of the never-disturbed sites increased in the recovering sites through time. Forb and legume cover declines in years since abandonment, relative to graminoid cover across sites. Synthesis. We found that, during the 80 years after agricultural abandonment, old fields did not recover to the level of biodiversity in remnant never-ploughed sites at any scale. β-diversity recovered more than α-scale or γ-scale. Plant species composition recovered, but not completely, over time, and some species groups increased their cover more than others. Patterns of ecological recovery in degraded ecosystems across space and long time-scales can inform targeted active restoration interventions and perhaps, lead to better outcomes

Disease forecasting and the role of pollinators in the spread of blossom blight of seed alfalfa in Southern Alberta

Blossom blight of seed alfalfa (Medicago sativa L.), caused by fungal pathogens Botrytis cinerea Pers.:Fr. and Sclerotinia sclerotiorum (Lib.) de Bary, can contribute to significant yield declines in moist growing seasons. In a greenhouse study that examined the occurrence of pollen infection by B. cinerea, pollen infection was observed at very low levels (200 ascospores per day) discharge days observed beginning in mid-July and continuing to the end of August. In the other two fields surveyed, discharge of S. sclerotiorum was concentrated in one or two large events. It is concluded that pollen infection and transmission of blossom blight pathogens by leafcutter bees are not large contributors to the spread of blossom blight in southern Alberta. In addition, using qPCR to quantify airborne inoculum levels will likely be useful in developing a disease forecasting model for blossom blight of seed alfalfa.Alberta Crop Industry Development Fund and the Alfalfa Seed Commission (Alberta); Grant number 2013F051