Quantum phases in entropic dynamics

In the Entropic Dynamics framework the dynamics is driven by maximizing entropy subject to appropriate constraints. In this work we bring Entropic Dynamics one step closer to full equivalence with quantum theory by identifying constraints that lead to wave functions that remain single-valued even for multi-valued phases by recognizing the intimate relation between quantum phases, gauge symmetry, and charge quantization.Comment: Presented at MaxEnt 2017, the 37th International Workshop on Bayesian Inference and Maximum Entropy Methods in Science and Engineering (July 9-14, 2017, Jarinu, Brazil

A cryptotephra record from the Lake Victoria sediment core record of holocene palaeoenvironmental change

The sediment record from Lake Victoria is an important archive of regional environmental and climatic conditions, reaching back more than 15,000 cal. years before present (15 ka BP). As the largest lake by area in East Africa, its evolution is key to understanding regional palaeohydrological change during the late Pleistocene and Holocene, including controls on the Nile River flow. As well as important palaeoenvironmental proxies, the lake contains a unique record of explosive volcanism from the central Kenyan Rift, in the form of fine-grained volcanic ash (tephra) layers, interpreted as airfall deposits. In the V95-1P core, collected from the central northern basin of the lake, tephra layers vary in concentration from 10s to 10s of 1000s of glass shards per gram of sediment. None of the tephra are visible to the naked eye, and have only been revealed through careful laboratory processing. Compositional analyses of tephra glass shards has allowed the tephra layers to be correlated to previously unrecognized eruptions of Eburru volcano around 1.2 and 3.8 ka, and Olkaria volcano, prior to 15 ka. These volcanoes lie ~300 km east of the core site in the Kenyan Rift. Our results highlight the potential for developing cryptotephra analysis as a key tool in East African palaeolimnological research. Tephra layers offer opportunities for precise correlation of palaeoenvironmental sequences, as well as windows into the eruption frequency of regional volcanoes and the dispersal of volcanic ash. Leverhulme Trust Early Career Fellowshi

Discovery of Mount Mazama cryptotephra in Lake Superior (North America): Implications and potential applications

Tephrochronology is a widely applied method recognized for its exceptional precision in geologic dating and stratigraphic correlation. Tephra from the ~7.6 kyr B.P. Mount Mazama caldera-forming (”climactic”) eruption have been widely identified and applied as stratigraphic isochrons sediments of northwestern North America, as well as in the Greenland ice core records. Recent findings of a microscopic tephra accumulation, or cryptotephra, from Mazama in Newfoundland indicated that this horizon should also be found in Lake Superior sediments. We present findings that confirm the presence of Mazama ash in two sediment cores from the Lake Superior basin, which indicates its likely presence in the rest of the Laurentian Great Lakes and in deposits throughout much of eastern North America and beyond. The ubiquity of this stratigraphic horizon should be applicable to a higher resolution evaluation of climatological, ecological, and archaeological events during the early- to mid-Holocene thermal maximum throughout much of North America.This research was supported by a Regents Professor grant by the University of Minnesota to Johnso

Less-healthy eating behaviors have a greater association with a high level of sugar-sweetened beverage consumption among rural adults than among urban adults

Background: Sugar-sweetened beverage (SSB) consumption is associated with the increasing prevalence of overweight and obesity in the United States; however, little is known about how less-healthy eating behaviors influence high levels of SSB consumption among rural adults. Objective: We assessed the frequency of SSB consumption among rural and urban adults, examined the correlates of frequent SSB consumption, and determined difference in correlates between rural and urban adults in a large region of Texas. Design: A cross-sectional study using data on 1,878 adult participants (urban = 734 and rural = 1,144), who were recruited by random digit dialing to participate in the seven-county 2006 Brazos Valley Community Health Assessment. Data included demographic characteristics, eating behaviors (SSB consumption, frequency of fast-food meals, frequency of breakfast meals, and daily fruit and vegetable intake), and household food insecurity. Results: The prevalence of any consumption of SSB and the prevalence of high consumption of SSB were significantly higher among rural adults compared with urban counterparts. The multivariable logistic regression models indicated that a high level of SSB consumption (≥3 cans or glasses SSB/day) was associated with demographic characteristics (poverty-level income and children in the home), frequent consumption of fast-food meals, infrequent breakfast meals, low fruit and vegetable intake, and household food insecurity especially among rural adults. Conclusions: This study provides impetus for understanding associations among multiple eating behaviors, especially among economically and geographically disadvantaged adults. New strategies are needed for educating consumers, not only about how to moderate their SSB intake, but also how to simultaneously disrupt the co-occurrence of undesirable eating and promote healthful eating

A Convergent, Umpoled Synthesis of 2-(1-Amidoalkyl)pyridines

A convenient, one-pot, two-component synthesis of 2-(1-amidoalkyl)pyridines is reported, based upon the substitution of suitably-activated pyridine N-oxides by azlactone nucleophiles, followed by decarboxylative azlactone ring-opening. The synthesis obviates the need for precious metal catalysts to achieve a formal enolate arylation reaction, and constitutes a formally ‘umpoled’ approach to this valuable class of bioactive structures

Three-Component Synthesis of Pyridylacetic Acid Derivatives by Arylation/Decarboxylative Substitution of Meldrum’s Acids

A convenient and simple three-component synthesis of substituted pyridylacetic acid derivatives is reported. The approach centers on the dual reactivity of Meldrum’s acid derivatives, initially as nucleophiles to perform substitution on activated pyridine-N-oxides, then as electrophiles with a range of nucleophiles to trigger ring-opening and decarboxylation

HANFORD DOUBLE SHELL TANK THERMAL AND SEISMIC PROJECT SENSITIVITY OF DOUBLE SHELL DYNAMIC RESPONSE TO THE WASTE ELASTIC PROPERTIES

The purpose of this study was to determine the sensitivity of the dynamic response of the Hanford double-shell tanks (DSTs) to the assumptions regarding the constitutive properties of the contained waste. In all cases, the waste was modeled as a uniform linearly elastic material. The focus of the study was on the changes in the modal response of the tank and waste system as the extensional modulus (elastic modulus in tension and compression) and shear modulus of the waste were varied through six orders of magnitude. Time-history analyses were also performed for selected cases and peak horizontal reaction forces and axial stresses at the bottom of the primary tank were evaluated. Because the analysis focused on the differences in the responses between solid-filled and liquid-filled tanks, it is a comparative analysis rather than an analysis of record for a specific tank or set of tanks. The shear modulus was varied between 4 x 10{sup 3} Pa and 4.135 x 10{sup 9} Pa. The lowest value of shear modulus was sufficient to simulate the modal response of a liquid-containing tank, while the higher values are several orders of magnitude greater than the upper limit of expected properties for tank contents. The range of elastic properties used was sufficient to show liquid-like response at the lower values, followed by a transition range of semi-solid-like response to a clearly identifiable solid-like response. It was assumed that the mechanical properties of the tank contents were spatially uniform. Because sludge-like materials are expected only to exist in the lower part of the tanks, this assumption leads to an exaggeration of the effects of sludge-like materials in the tanks. The results of the study show that up to a waste shear modulus of at least 40,000 Pa, the modal properties of the tank and waste system are very nearly the same as for the equivalent liquid-containing tank. This suggests that the differences in critical tank responses between liquid-containing tanks and tanks containing sludge-like materials having a shear modulus not exceeding 40,000 Pa are unlikely to be greater than those due to the uncertainties involved in the definition of the design ground motion or in the properties of the tank-waste system. This is the fundamental conclusion of the study. The study also shows that increasing the waste extensional modulus and shear modulus does not lead to increased mass participation at the impulsive frequency of the liquid-containing system. Instead, increasing the waste stiffness eventually leads to fundamental changes in the modal properties including an increase in the fundamental system frequency

Potential role of PC-1 expression and pyrophosphate elaboration in the molecular etiology of the FGFR-associated craniosynostosis syndromes

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/73652/1/j.1601-6343.2007.00387.x.pd

Error, reproducibility and sensitivity : a pipeline for data processing of Agilent oligonucleotide expression arrays

Background Expression microarrays are increasingly used to obtain large scale transcriptomic information on a wide range of biological samples. Nevertheless, there is still much debate on the best ways to process data, to design experiments and analyse the output. Furthermore, many of the more sophisticated mathematical approaches to data analysis in the literature remain inaccessible to much of the biological research community. In this study we examine ways of extracting and analysing a large data set obtained using the Agilent long oligonucleotide transcriptomics platform, applied to a set of human macrophage and dendritic cell samples. Results We describe and validate a series of data extraction, transformation and normalisation steps which are implemented via a new R function. Analysis of replicate normalised reference data demonstrate that intrarray variability is small (only around 2% of the mean log signal), while interarray variability from replicate array measurements has a standard deviation (SD) of around 0.5 log2 units ( 6% of mean). The common practise of working with ratios of Cy5/Cy3 signal offers little further improvement in terms of reducing error. Comparison to expression data obtained using Arabidopsis samples demonstrates that the large number of genes in each sample showing a low level of transcription reflect the real complexity of the cellular transcriptome. Multidimensional scaling is used to show that the processed data identifies an underlying structure which reflect some of the key biological variables which define the data set. This structure is robust, allowing reliable comparison of samples collected over a number of years and collected by a variety of operators. Conclusions This study outlines a robust and easily implemented pipeline for extracting, transforming normalising and visualising transcriptomic array data from Agilent expression platform. The analysis is used to obtain quantitative estimates of the SD arising from experimental (non biological) intra- and interarray variability, and for a lower threshold for determining whether an individual gene is expressed. The study provides a reliable basis for further more extensive studies of the systems biology of eukaryotic cells

Observation of coherent many-body Rabi oscillations

A two-level quantum system coherently driven by a resonant electromagnetic field oscillates sinusoidally between the two levels at frequency $\Omega$ which is proportional to the field amplitude [1]. This phenomenon, known as the Rabi oscillation, has been at the heart of atomic, molecular and optical physics since the seminal work of its namesake and coauthors [2]. Notably, Rabi oscillations in isolated single atoms or dilute gases form the basis for metrological applications such as atomic clocks and precision measurements of physical constants [3]. Both inhomogeneous distribution of coupling strength to the field and interactions between individual atoms reduce the visibility of the oscillation and may even suppress it completely. A remarkable transformation takes place in the limit where only a single excitation can be present in the sample due to either initial conditions or atomic interactions: there arises a collective, many-body Rabi oscillation at a frequency $N^0.5\Omega$ involving all N >> 1 atoms in the sample [4]. This is true even for inhomogeneous atom-field coupling distributions, where single-atom Rabi oscillations may be invisible. When one of the two levels is a strongly interacting Rydberg level, many-body Rabi oscillations emerge as a consequence of the Rydberg excitation blockade. Lukin and coauthors outlined an approach to quantum information processing based on this effect [5]. Here we report initial observations of coherent many-body Rabi oscillations between the ground level and a Rydberg level using several hundred cold rubidium atoms. The strongly pronounced oscillations indicate a nearly complete excitation blockade of the entire mesoscopic ensemble by a single excited atom. The results pave the way towards quantum computation and simulation using ensembles of atoms