Elasticity, fluctuations and vortex pinning in ferromagnetic superconductors: A "columnar elastic glass"

We study the elasticity, fluctuations and pinning of a putative spontaneous vortex solid in ferromagnetic superconductors. Using a rigorous thermodynamic argument, we show that in the idealized case of vanishing crystalline pinning anisotropy the long-wavelength tilt modulus of such a vortex solid vanishes identically, as guaranteed by the underlying rotational invariance. The vanishing of the tilt modulus means that, to lowest order, the associated tension elasticity is replaced by the softer, curvature elasticity. The effect of this is to make the spontaneous vortex solid qualitatively more susceptible to the disordering effects of thermal fluctuations and random pinning. We study these effects, taking into account the nonlinear elasticity, that, in three dimensions, is important at sufficiently long length scales, and showing that a ``columnar elastic glass'' phase of vortices results. This phase is controlled by a previously unstudied zero-temperature fixed point and it is characterized by elastic moduli that have universal strong wave-vector dependence out to arbitrarily long length scales, leading to non-Hookean elasticity. We argue that, although translationally disordered for weak disorder, the columnar elastic glass is stable against the proliferation of dislocations and is therefore a topologically ordered {\em elastic} glass. As a result, the phenomenology of the spontaneous vortex state of isotropic magnetic superconductors differs qualitatively from a conventional, external-field-induced mixed state. For example, for weak external fields $H$, the magnetic induction scales {\em universally} like $B(H)\sim B(0)+ c H^{\alpha}$, with $\alpha\approx 0.72$.Comment: Minor editorial changes, version to be published in PRB, 39 pages, 7 figure

"Soft" Anharmonic Vortex Glass in Ferromagnetic Superconductors

Ferromagnetic order in superconductors can induce a {\em spontaneous} vortex (SV) state. For external field ${\bf H}=0$, rotational symmetry guarantees a vanishing tilt modulus of the SV solid, leading to drastically different behavior than that of a conventional, external-field-induced vortex solid. We show that quenched disorder and anharmonic effects lead to elastic moduli that are wavevector-dependent out to arbitrarily long length scales, and non-Hookean elasticity. The latter implies that for weak external fields $H$, the magnetic induction scales {\em universally} like $B(H)\sim B(0)+ c H^{\alpha}$, with $\alpha\approx 0.72$. For weak disorder, we predict the SV solid is a topologically ordered vortex glass, in the ``columnar elastic glass'' universality class.Comment: minor corrections; version published in PR

NMDA Receptor Dysfunction and Development of Translational Biomarkers for Autism and Schizophrenia

Autism and schizophrenia are neurodevelopmental disorders which both have highly disabling negative and cognitive symptoms with few effective treatments. A challenge to developing effective therapeutics is a dearth of pre-clinical models. Part of the difficulty in developing predictive models is that the symptoms being treated are complex, and difficult to reduce to a simple behavioral task. Therefore, the use of endophenotypes from methods such as EEG presents a new promising avenue for a model of complex human behaviors pre-clinically. New evidence suggests that autism and schizophrenia have reliable electrophysiological endophenotypes, some of which have been correlated to negative and cognitive symptoms. These endophenotypes therefore represent a possible new pathway for understanding the disrupted circuits in both diseases and developing treatments. Evidence has been accumulating for glutamate disruption in both schizophrenia and autism; accordingly, pre-clinical models are being developed around NMDA receptor (NMDAR) disruption to examine both diseases. NMDA disruption models have been used for many behavioral tasks, but only a few possible electrophysiological endophenotypes such as ERP amplitudes have been investigated. Investigating pre-clinical models of established clinical endophenotypes could lead to better translational biomarkers of disease symptoms. This thesis\u27s unifying theme is the study of how glutamate disruption can recreate the electrophysiological endophenotypes present in autism and schizophrenia and develop their use as translational biomarkers in both diseases. The primary models of focus are acute NMDA antagonist administration and NMDAR knockdown of PV interneurons. I used these models to examine the relationship between dose and EEG changes, along with the perturbations present with NMDAR disruption in PV interneurons. I investigated the degree to which NMDAR antagonists recreate signal-to-noise ratio (SNR) and timing perturbations in schizophrenia, and found a dose-dependent decrease in SNR and timing consistency. I assessed the extent to which low dose NMDAR antagonism recreates latency and gamma synchrony perturbations present in autism and found latency was increased and gamma synchrony was decreased dose-dependently. I examined the extent to which Parvalbumin (PV) containing interneurons cell type selective NR1 KO mice recreate the clinical EEG profiles of autism and found selective deficits in social behavior and increases in N1 latency

Inter-species horizontal transfer resulting in core-genome and niche-adaptive variation within Helicobacter pylori

Background Horizontal gene transfer is central to evolution in most bacterial species. The detection of exchanged regions is often based upon analysis of compositional characteristics and their comparison to the organism as a whole. In this study we describe a new methodology combining aspects of established signature analysis with textual analysis approaches. This approach has been used to analyze the two available genome sequences of H. pylori. Results This gene-by-gene analysis reveals a wide range of genes related to both virulence behaviour and the strain differences that have been relatively recently acquired from other sequence backgrounds. These frequently involve single genes or small numbers of genes that are not associated with transposases or bacteriophage genes, nor with inverted repeats typically used as markers for horizontal transfer. In addition, clear examples of horizontal exchange in genes associated with 'core' metabolic functions were identified, supported by differences between the sequenced strains, including: ftsK, xerD and polA. In some cases it was possible to determine which strain represented the 'parent' and 'altered' states for insertion-deletion events. Different signature component lengths showed different sensitivities for the detection of some horizontally transferred genes, which may reflect different amelioration rates of sequence components. Conclusion New implementations of signature analysis that can be applied on a gene-by-gene basis for the identification of horizontally acquired sequences are described. These findings highlight the central role of the availability of homologous substrates in evolution mediated by horizontal exchange, and suggest that some components of the supposedly stable 'core genome' may actually be favoured targets for integration of foreign sequences because of their degree of conservation

Detecting early signs of depressive and manic episodes in patients with bipolar disorder using the signature-based model

Recurrent major mood episodes and subsyndromal mood instability cause substantial disability in patients with bipolar disorder. Early identification of mood episodes enabling timely mood stabilisation is an important clinical goal. Recent technological advances allow the prospective reporting of mood in real time enabling more accurate, efficient data capture. The complex nature of these data streams in combination with challenge of deriving meaning from missing data mean pose a significant analytic challenge. The signature method is derived from stochastic analysis and has the ability to capture important properties of complex ordered time series data. To explore whether the onset of episodes of mania and depression can be identified using self-reported mood data.Comment: 12 pages, 3 tables, 10 figure

Status of the variable diameter centerbody inlet program

The Variable Diameter Centerbody (VDC) inlet is an ongoing research program at LeRC. The VDC inlet is a mixed compression, axisymmetric inlet that has potential application on the next generation supersonic transport. This inlet was identified as one of the most promising axisymmetric concepts for supersonic cruise aircraft during the SCAR program in the late 1970's. Some of its features include high recovery, low bleed, good angle-of-attack tolerance, and excellent engine airflow matching. These features were demonstrated at LeRC in the past by the design and testing of fixed hardware models. A current test program in the LeRC 10' x 10' Supersonic Wind Tunnel (SWT) will attempt to duplicate these features on model hardware that actually incorporates a flight-like variable diameter centerbody mechanism

Predictors of subgroups based on maximum drinks per occasion over six years for 833 adolescents and young adults in COGA.

ObjectiveA person's pattern of heavier drinking often changes over time, especially during the early drinking years, and reflects complex relationships among a wide range of characteristics. Optimal understanding of the predictors of drinking during times of change might come from studies of trajectories of alcohol intake rather than cross-sectional evaluations.MethodThe patterns of maximum drinks per occasion were evaluated every 2 years between the average ages of 18 and 24 years for 833 subjects from the Collaborative Study on the Genetics of Alcoholism. Latent class growth analysis identified latent classes for the trajectories of maximum drinks, and then logistic regression analyses highlighted variables that best predicted class membership.ResultsFour latent classes were found, including Class 1 (69%), with about 5 maximum drinks per occasion across time; Class 2 (15%), with about 9 drinks at baseline that increased to 18 across time; Class 3 (10%), who began with a maximum of 18 drinks per occasion but decreased to 9 over time; and Class 4 (6%), with a maximum of about 22 drinks across time. The most consistent predictors of higher drinking classes were female sex, a low baseline level of response to alcohol, externalizing characteristics, prior alcohol and tobacco use, and heavier drinking peers.ConclusionsFour trajectory classes were observed and were best predicted by a combination of items that reflected demography, substance use, level of response and externalizing phenotypes, and baseline environment and attitudes

Disordering to Order: de Vries behavior from a Landau theory for smectics

We show that Landau theory for the isotropic, nematic, smectic A, and smectic C phases generically, but not ubiquitously, implies de Vries behavior. I.e., a continuous AC transition can occur with little layer contraction; the birefringence decreases as temperature T is lowered above this transition, and increases again below the transition. This de Vries behavior occurs in models with unusually small orientational order, and is preceded by a first order I − A transition. A first order AC transition with elements of de Vries behavior can also occur. These results correspond well with experimental work to date.Comment: 4 pages, 2 page appendi

Sugar Derivatives in Residues Produced from the UV Irradiation of Astrophysical Ice Analogs

A large variety of organic compounds of astrobiological and prebiotic interest have been detected in carbonaceous meteorites. These include amino acids, carboxylic acids, amphiphiles, functionalized nitrogen heterocycles such as nucleobases, functionalized polycylic aromatic hydrocarbons such as quinones, and sugar derivatives. The sugar derivatives identified in the Murchison and Murray meteorites are mainly sugar alcohols and sugar acids, and only the smallest sugar (dihydroxyacetone) has been detected. The presence of such a variety of organics in meteorites strongly suggests that molecules essential to life can form abiotically under astrophysical conditions. This hypothesis is further supported by laboratory studies in which astrophysical ice analogs (mixtures of H2O, CO, CO2, CH3OH, CH4, NH3, etc.) are subjected to ultraviolet (UV) irradiation at low temperature (<15 K) to simulate cold interstellar environments. These studies show that the organic residues recovered at room temperature after irradiation contain amino acids, amphiphiles, nucleobases, sugar derivatives, as well as other complex organic compounds. The finding of such compounds under plausible interstellar conditions is consistent with the presence of organic compounds in meteorites. Until very recently, no systematic search for the presence of sugar derivatives in laboratory residues had been carried out. The detection of ribose, the sugar constituent of RNA in all living systems, as well as other sugars, sugar alcohols, and sugar acids have been recently reported in one organic residue produced from the UV irradiation of an H2O:CH3OH:NH3 (10:3.5:1) ice mixture at 80 K. In this work, we present a detailed study of organic residues produced from the UV irradiation ice mixtures of several starting compositions (containing H2O, CH3OH, CO, CO2, and/or NH3) at <15 K for their sugar derivative content. Our results confirm the presence of all 3C5C sugar alcohols, several 3C5C sugars, and all 3C4C sugar acids (in decreasing order of abundances) in the residues. The higher abundances of sugar alcohols in these residues suggest a pathway in which sugar alcohols are formed first, while the formation of sugars and sugar acids require more steps. Finally, our results are compared with the detection of sugars derivatives in primitive meteorites

Characterization of Murine Carcinoembryonic Antigen Gene Family Members

The carcinoembryonic antigen (CEA) is a human tumor marker whose gene belongs to a family with more than 20 members. This gene family codes for a group of proteins with in vitro cell adhesion properties and for a group of abundantly expressed pregnancy-specific glycoproteins (PSG) with unknown functions. As a basis for in vivo functional studies, we have started to analyze the murine CEA gene family and have identified five new members (Cea-2 to Cea-6). cDNA clones were isolated for Cea-2, Cea-3, and Cea-6. The deduced amino acid sequences of Cea-2 and Cea-6 indicate three IgV-like (N), followed by one IgC-like (A) domain (N1-N2-N3-A). We have also partially characterized the Cea-2 gene and two additional ones, Cea-4 and Cea-5. Cea-2 and Cea-4 are separated by only 16 kb, suggesting a close linkage of murine CEA-related genes, as found for the human CEA gene family. Cea-5 was located to the proximal region of mouse Chromosome (Chr) 7, which is syntenic to part of human Chr 19, containing the human CEA gene family cluster. Cea-2, Cea-3, and a Cea-4-like gene are differentially transcribed in the placenta during pregnancy, but not in other organs tested. This expression pattern strongly suggests that they represent counterparts of the human PSG subgroup members, despite the presence of multiple IgV-like domains, a feature not found for human PSGs. The more distantly related Cea-5 seems to be ubiquitously expressed. The putative promoter region of Cea-2 lacks typical TATA-or CAAT-boxes, but contains other conserved motifs that could play a role in the initiation of transcription