Presynaptic modulation as fast synaptic switching: state-dependent modulation of task performance

Neuromodulatory receptors in presynaptic position have the ability to suppress synaptic transmission for seconds to minutes when fully engaged. This effectively alters the synaptic strength of a connection. Much work on neuromodulation has rested on the assumption that these effects are uniform at every neuron. However, there is considerable evidence to suggest that presynaptic regulation may be in effect synapse-specific. This would define a second "weight modulation" matrix, which reflects presynaptic receptor efficacy at a given site. Here we explore functional consequences of this hypothesis. By analyzing and comparing the weight matrices of networks trained on different aspects of a task, we identify the potential for a low complexity "modulation matrix", which allows to switch between differently trained subtasks while retaining general performance characteristics for the task. This means that a given network can adapt itself to different task demands by regulating its release of neuromodulators. Specifically, we suggest that (a) a network can provide optimized responses for related classification tasks without the need to train entirely separate networks and (b) a network can blend a "memory mode" which aims at reproducing memorized patterns and a "novelty mode" which aims to facilitate classification of new patterns. We relate this work to the known effects of neuromodulators on brain-state dependent processing.Comment: 6 pages, 13 figure

AutoBayes: A System for Generating Data Analysis Programs from Statistical Models

Data analysis is an important scientific task which is required whenever information needs to be extracted from raw data. Statistical approaches to data analysis, which use methods from probability theory and numerical analysis, are well-founded but difficult to implement: the development of a statistical data analysis program for any given application is time-consuming and requires substantial knowledge and experience in several areas. In this paper, we describe AutoBayes, a program synthesis system for the generation of data analysis programs from statistical models. A statistical model specifies the properties for each problem variable (i.e., observation or parameter) and its dependencies in the form of a probability distribution. It is a fully declarative problem description, similar in spirit to a set of differential equations. From such a model, AutoBayes generates optimized and fully commented C/C++ code which can be linked dynamically into the Matlab and Octave environments. Code is produced by a schema-guided deductive synthesis process. A schema consists of a code template and applicability constraints which are checked against the model during synthesis using theorem proving technology. AutoBayes augments schema-guided synthesis by symbolic-algebraic computation and can thus derive closed-form solutions for many problems. It is well-suited for tasks like estimating best-fitting model parameters for the given data. Here, we describe AutoBayes's system architecture, in particular the schema-guided synthesis kernel. Its capabilities are illustrated by a number of advanced textbook examples and benchmarks

Synthesizing Certified Code

Code certification is a lightweight approach for formally demonstrating software quality. Its basic idea is to require code producers to provide formal proofs that their code satisfies certain quality properties. These proofs serve as certificates that can be checked independently. Since code certification uses the same underlying technology as program verification, it requires detailed annotations (e.g., loop invariants) to make the proofs possible. However, manually adding annotations to the code is time-consuming and error-prone. We address this problem by combining code certification with automatic program synthesis. Given a high-level specification, our approach simultaneously generates code and all annotations required to certify the generated code. We describe a certification extension of AutoBayes, a synthesis tool for automatically generating data analysis programs. Based on built-in domain knowledge, proof annotations are added and used to generate proof obligations that are discharged by the automated theorem prover E-SETHEO. We demonstrate our approach by certifying operator- and memory-safety on a data-classification program. For this program, our approach was faster and more precise than PolySpace, a commercial static analysis tool

Automatic Derivation of Statistical Data Analysis Algorithms: Planetary Nebulae and Beyond

AUTOBAYES is a fully automatic program synthesis system for the data analysis domain. Its input is a declarative problem description in form of a statistical model; its output is documented and optimized C/C++ code. The synthesis process relies on the combination of three key techniques. Bayesian networks are used as a compact internal representation mechanism which enables problem decompositions and guides the algorithm derivation. Program schemas are used as independently composable building blocks for the algorithm construction; they can encapsulate advanced algorithms and data structures. A symbolic-algebraic system is used to find closed-form solutions for problems and emerging subproblems. In this paper, we describe the application of AUTOBAYES to the analysis of planetary nebulae images taken by the Hubble Space Telescope. We explain the system architecture, and present in detail the automatic derivation of the scientists’ original analysis [1] as well as a refined analysis using clustering models. This study demonstrates that AUTOBAYES is now mature enough so that it can be applied to realistic scientific data analysis tasks

Automatic Derivation of Statistical Algorithms: The EM Family and Beyond

Machine learning has reached a point where many probabilistic methods can be understood as variations, extensions and combinations of a much smaller set of abstract themes, e.g., as different instances of the EM algorithm. This enables the systematic derivation of algorithms customized for different models. Here, we describe the AUTOBAYES system which takes a high-level statistical model specification, uses powerful symbolic techniques based on schema-based program synthesis and computer algebra to derive an efficient specialized algorithm for learning that model, and generates executable code implementing that algorithm. This capability is far beyond that of code collections such as Matlab toolboxes or even tools for model-independent optimization such as BUGS for Gibbs sampling: complex new algorithms can be generated without new programming, algorithms can be highly specialized and tightly crafted for the exact structure of the model and data, and efficient and commented code can be generated for different languages or systems. We present automatically-derived algorithms ranging from closed-form solutions of Bayesian textbook problems to recently-proposed EM algorithms for clustering, regression, and a multinomial form of PCA

Software Health Management with Bayesian Networks

Most modern aircraft as well as other complex machinery is equipped with diagnostics systems for its major subsystems. During operation, sensors provide important information about the subsystem (e.g., the engine) and that information is used to detect and diagnose faults. Most of these systems focus on the monitoring of a mechanical, hydraulic, or electromechanical subsystem of the vehicle or machinery. Only recently, health management systems that monitor software have been developed. In this paper, we will discuss our approach of using Bayesian networks for Software Health Management (SWHM). We will discuss SWHM requirements, which make advanced reasoning capabilities for the detection and diagnosis important. Then we will present our approach to using Bayesian networks for the construction of health models that dynamically monitor a software system and is capable of detecting and diagnosing faults

ESAS Deliverable PS 1.1.2.3: Customer Survey on Code Generations in Safety-Critical Applications

Automated code generators (ACG) are tools that convert a (higher-level) model of a software (sub-)system into executable code without the necessity for a developer to actually implement the code. Although both commercially supported and in-house tools have been used in many industrial applications, little data exists on how these tools are used in safety-critical domains (e.g., spacecraft, aircraft, automotive, nuclear). The aims of the survey, therefore, were threefold: 1) to determine if code generation is primarily used as a tool for prototyping, including design exploration and simulation, or for fiight/production code; 2) to determine the verification issues with code generators relating, in particular, to qualification and certification in safety-critical domains; and 3) to determine perceived gaps in functionality of existing tools

R2U2: Tool Overview

R2U2 (Realizable, Responsive, Unobtrusive Unit) is an extensible framework for runtime System HealthManagement (SHM) of cyber-physical systems. R2U2 can be run in hardware (e.g., FPGAs), or software; can monitorhardware, software, or a combination of the two; and can analyze a range of different types of system requirementsduring runtime. An R2U2 requirement is specified utilizing a hierarchical combination of building blocks: temporal formula runtime observers (in LTL or MTL), Bayesian networks, sensor filters, and Boolean testers. Importantly, the framework is extensible; it is designed to enable definitions of new building blocks in combination with the core structure. Originally deployed on Unmanned Aerial Systems (UAS), R2U2 is designed to run on a wide range of embedded platforms, from autonomous systems like rovers, satellites, and robots, to human-assistive ground systems and cockpits. R2U2 is named after the requirements it satisfies; while the exact requirements vary by platform and mission, the ability to formally reason about realizability, responsiveness, and unobtrusiveness is necessary for flight certifiability, safety-critical system assurance, and achievement of technology readiness levels for target systems. Realizability ensures that R2U2 is suficiently expressive to encapsulate meaningful runtime requirements while maintaining adaptability to run on different platforms, transition between different mission stages, and update quickly between missions. Responsiveness entails continuously monitoring the system under test, real-time reasoning, reporting intermediate status, and as-early-as-possible requirements evaluations. Unobtrusiveness ensures compliance with the crucial properties of the target architecture: functionality, certifiability, timing, tolerances, cost, or other constraints