39 research outputs found
Canadian benthos Fasta files
No full textFasta files for the benthos insect datasets from Fredericton, New Brunswick, Canada: 1) ~ 100 bp fragments (454), 2) ~ 200 bp fragments (454), 3) ~ 600 bp reference (Sanger) sequences
Customizing the Insecta taxonomy used with the classifier
No full textContains three tab-delimited taxonomy files that can be used to help customize the taxonomic scheme used by the naive Bayesian classifier: 1) GenBank-genus, 2) GenBank-barcode, 3) GenBank-family. One of these files, should be used with one of the two provided Perl scripts to generate a taxonomy file in the format required by the Ribosomal Database Project naive Bayesian classifier during training: 1) make_NBC_taxonomy.plx, 2) make_NBC_taconomy_family.plx
Benthic_PAD-June2012_F230-BE_Dryad_submission
No full textBenthic_PAD-June2012_F230-BE_Dryad_submissio
Training the naive Bayesian classifier
No full textContains the Fasta and taxonomy files needed to train the Ribosomal Database Project naive Bayesian classifier three different ways: 1) GenBank-genus, 2) GenBank-barcode, 3) GenBank-family
Pearson product moment correlations between alpha diversity metrics calculated at different taxonomic levels via morphological identification and HTS.
No full text<p>Highlighted values indicate a significant (<i>p</i><0.05), positive correlation between indices at two different taxonomic levels.</p><p>Pearson product moment correlations between alpha diversity metrics calculated at different taxonomic levels via morphological identification and HTS.</p
Alpha diversity metrics calculated for 24 benthic samples from the Peace-Athabasca delta at five different taxonomic levels via morphological identification and HTS.
No full text<p>Means of all samples plus one standard deviation are depicted. Taxonomic levels at which a significant difference (<i>p</i><0.05) between means of values for Athabasca and Peace sites are highlighted. A—Athabasca River sites. P–Peace River sites.</p
