Solid like friction of a polymer chain

We propose a simple friction model for isolated polymer chains on a solid substrate. The chains are pulled at constant velocity by one end, the other end can be trapped on the solid substrate on localised sites. We focus on the energy dissipation due to the traps. This simple model leads to non trivial friction laws, depending on the velocity and the distance between traps. Some refinements of the model such as the effect of thermal fluctuation are also reported.Comment: 16 pages, 4 eps figures, accepted for publuication in Eur. Phys. J. E New version of 20/07/2000 minor modifications to figure

Bistability, oscillations and bidirectional motion of ensemble of hydrodynamically-coupled molecular motors

We analyze the collective behavior of hydrodynamically coupled molecular motors. We show that the local fluxes induced by motors displacement can induce the experimentally observed bidirectional motion of cargoes and vesicles. By means of a mean--field approach we show that sustained oscillations as well as bistable collective motor motion arise even for very large collection of motors, when thermal noise is irrelevant. The analysis clarifies the physical mechanisms responsible for such dynamics by identifying the relevant coupling parameter and its dependence on the geometry of the hydrodynamic coupling as well as on system size. We quantify the phase diagram for the different phases that characterize the collective motion of hydrodynamically coupled motors and show that sustained oscillations can be reached for biologically relevant parameters, hence demonstrating the relevance of hydrodynamic interactions in intracellular transport

Adsorption of polyampholytes on charged surfaces

We have studied the adsorption of neutral polyampholytes on model charged surfaces that have been characterized by contact angle and streaming current measurements. The loop size distributions of adsorbed polymer chains have been obtained using atomic force microscopy (AFM) and compared to recent theoretical predictions. We find a qualitative agreement with theory; the higher the surface charge, the smaller the number of monomers in the adsorbed layer, in agreement with theory. We propose an original scenario for the adsorption of polyampholytes on surfaces covered with both neutral long-chain and charged short-chain thiols.Comment: 11 pages, 17 figures, accepted for publication in EPJ

Stretching necklaces

Polyelectrolytes in poor solvents show a necklace structure where collapsed polymer pearls are linked to stretched strings. In the present paper the elasticity of such chains is studied in detail. Different deformation regimes are addressed. The first is the continuous regime, where many pearls are present. A continuous force extension relation ship is calculated. The main contribution comes from the tension balance and the electrostatic repulsion of consecutive pearls. The main correction term stems from the finite size of the pearls, which monitors their surface energy. For a finite amount of pearls discontinuous stretching is predicted. Finally counterion effects are discussed qualitatively.Comment: to appear in European Phys. Journal E (soft matter

Compression of finite size polymer brushes

We consider edge effects in grafted polymer layers under compression. For a semi-infinite brush, the penetration depth of edge effects $\xi\propto h_0(h_0/h)^{1/2}$ is larger than the natural height $h_0$ and the actual height $h$. For a brush of finite lateral size $S$ (width of a stripe or radius of a disk), the lateral extension $u_S$ of the border chains follows the scaling law $u_S = \xi \phi (S/\xi)$. The scaling function $\phi (x)$ is estimated within the framework of a local Flory theory for stripe-shaped grafting surfaces. For small $x$, $\phi (x)$ decays as a power law in agreement with simple arguments. The effective line tension and the variation with compression height of the force applied on the brush are also calculated.Comment: 6 pages, 7 figures, submitted to PCC

Casimir stresses in active nematic films

We calculate the Casimir stresses in a thin layer of active fluid with nematic order. By using a stochastic hydrodynamic approach for an active fluid layer of finite thickness L, we generalize the Casimir stress for nematic liquid crystals in thermal equilibrium to active systems. We show that the active Casimir stress differs significantly from its equilibrium counterpart. For contractile activity, the active Casimir stress, although attractive like its equilibrium counterpart, diverges logarithmically as L approaches a threshold of the spontaneous flow instability from below. In contrast, for small extensile activity, it is repulsive, has no divergence at any L and has a scaling with L different from its equilibrium counterpart

Influence of sequence correlations on the adsorption of random copolymers onto homogeneous planar surfaces

Using a reference system approach, we develop an analytical theory for the adsorption of random heteropolymers with exponentially decaying and/or oscillating sequence correlations on planar homogeneous surfaces. We obtain a simple equation for the adsorption-desorption transition line. This result as well as the validity of the reference system approach is tested by a comparison with numerical lattice calculations

Polymer adsorption onto random planar surfaces: Interplay of polymer and surface correlation

We study the adsorption of homogeneous or heterogeneous polymers onto heterogeneous planar surfaces with exponentially decaying site-site correlations, using a variational reference system approach. As a main result, we derive simple equations for the adsorption-desorption transition line. We show that the adsorption threshold is the same for systems with quenched and annealed disorder. The results are discussed with respect to their implications for the physics of molecular recognition

A database for the industrial trawl fishery of Cote d'Ivoire

Fishery statistics for the industrial trawl fishery of Cote d'Ivoire have been well documented since 1968. However, data processing has changed significantly with time and some of the data files have been lost. In 1997, the Centre de Recherches Oceanologiques d'Abidjan decided to retrieve and process all trawl data available from different sources. This paper gives an overview of the database covering the period 1968 to 1997 and describes its coverage, format, structure and use. The database was developed using MS ACCESS and is a powerful tool for storing information about this fishery, and for analysis of its dynamics over a period of 30 years