MC_GBS_L50_MD30

3341 loci analysed for this study. Individuals have less than 30% missing data

DBX5_genotype_alignment

Alignment of DBX5 genotypes of all individuals used for species tree inference

DBX6_haplotype_alignment

Alignment of DBX6 haplotypes inferred by Phase version 2.1 (Stephens et al. 2001; Stephens & Donnelly 2003) and used for gene tree inference

DBY7_genotype_alignment

Alignment of DBY7 sequences of all individuals used for species tree inference

RAG1_haplotype_alignment

Alignment of RAG1 haplotypes inferred by Phase version 2.1 (Stephens et al. 2001; Stephens & Donnelly 2003). Dataset used for gene tree inference

CYTB_genotype_alignment

Alignment of cytochrome b sequences of all individuals used for species tree inference

DBX5_haplotype_alignment

Alignment of DBX5 haplotypes inferred by Phase version 2.1 (Stephens et al. 2001; Stephens & Donnelly 2003) and used for gene tree inference

CYTB_haplotype_alignment

Alignment of cytochrome b haplotypes used for gene tree inference

DBY7_haplotype_alignment

Alignment of DBY7 haplotypes used for gene tree inference

RAG1_genotype_alignment

Alignment of RAG1 genotypes of all individuals used for species tree inference. This data set corresponds to the largest non-recombining blocks obtained with software IMgc (Woener et al. 2007). Two sequences are given per individual