Genotype data used for genome scans and construction of genetic maps

The Excel sheet entitled "Genotype_genome_scan" contains the genotypes of 109 individuals at 436 microsatelitte markers used for genome scan analyses. The Excel sheet entitled "Genotype_genetic_map" contains genotype data at 343 polymorphic microsatelitte markers on a 3-generation pedigree that have been used to construct genetic maps

Reproductive phenotype of F2 and F3 individuals according to their genotype in the candidate region.

<p>Given are the number of lineages determined as OP, the number of lineages phenotyped, and the percentage of OP lineages (in brackets). <i>op1</i> and <i>op2</i> alleles correspond to the alleles inherited from the L21V1 grandparent clone (OP phenotype). The four different alleles inherited from the two CP grandparents JML06 (alleles <i>CP1</i> and <i>CP2</i>) and LSR1 (<i>CP3</i> and <i>CP4</i>) were aggregated as “<i>CP</i>” since we did not observe differences of reproductive phenotype for the four different CP alleles (see <a href="http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1004838#pgen.1004838.s001" target="_blank">Fig. S1</a> for detailed information for each allele).</p>a<p>Progeny in these crosses was selected based on genotype at the candidate locus.</p><p>Reproductive phenotype of F2 and F3 individuals according to their genotype in the candidate region.</p

Outlier loci identified by genome scans.

<p>Outlier loci detected with ARLEQUIN 3.5 at α = 0.01 in a hierarchical analysis in which geographical populations were nested within group of populations experiencing selection for the same reproductive mode (OP <i>vs</i> CP). <i>F_CT</i> between CP and OP populations (and significance as outlier) are shown, as well as expected heterozygosity (<i>H_E</i>). Outlier detection analyses were also performed among OP and CP populations to ensure these loci were not outlier at this hierarchical level. The position on chromosomes is also given.</p><p>Outlier loci identified by genome scans.</p