Peste des Petits Ruminants Virus in Tibet, China

Serologic and molecular evidence indicates that peste des petits ruminants virus (PPRV) infection has emerged in goats and sheep in the Ngari region of southwestern Tibet, People’s Republic of China. Phylogenetic analysis confirms that the PPRV strain from Tibet is classified as lineage 4 and is closely related to viruses currently circulating in neighboring countries of southern Asia

The Genomes of Oryza sativa: A History of Duplications

We report improved whole-genome shotgun sequences for the genomes of indica and japonica rice, both with multimegabase contiguity, or almost 1,000-fold improvement over the drafts of 2002. Tested against a nonredundant collection of 19,079 full-length cDNAs, 97.7% of the genes are aligned, without fragmentation, to the mapped super-scaffolds of one or the other genome. We introduce a gene identification procedure for plants that does not rely on similarity to known genes to remove erroneous predictions resulting from transposable elements. Using the available EST data to adjust for residual errors in the predictions, the estimated gene count is at least 38,000–40,000. Only 2%–3% of the genes are unique to any one subspecies, comparable to the amount of sequence that might still be missing. Despite this lack of variation in gene content, there is enormous variation in the intergenic regions. At least a quarter of the two sequences could not be aligned, and where they could be aligned, single nucleotide polymorphism (SNP) rates varied from as little as 3.0 SNP/kb in the coding regions to 27.6 SNP/kb in the transposable elements. A more inclusive new approach for analyzing duplication history is introduced here. It reveals an ancient whole-genome duplication, a recent segmental duplication on Chromosomes 11 and 12, and massive ongoing individual gene duplications. We find 18 distinct pairs of duplicated segments that cover 65.7% of the genome; 17 of these pairs date back to a common time before the divergence of the grasses. More important, ongoing individual gene duplications provide a never-ending source of raw material for gene genesis and are major contributors to the differences between members of the grass family

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Improved Mechanical Properties of SUS304/AA5083 Dissimilar Joint by Laser Ablation Pretreatment in Vortex- Friction Stir Lap Welding

To obtain a high-quality Al/steel dissimilar joint, a micro-groove-assisted vortex-friction stir lap welding (MG-VFSLW) process was developed. Through prefabricating micro-grooves on the steel plate surface by laser ablation, high-quality mechanical interlock and metallurgical bonding were obtained simultaneously in the MG-VFSLW process. The weld formation, interface microstructure, mechanical properties, and failure mode in MG-VFSLW were studied by comparing them with those in VFSLW. The results showed that a line load of the AA5083/SUS304 dissimilar joint up to 485.9 N/mm was obtained by MG-VFSLW, which is 40.1% higher than that in VFSLW. Remarkable intermetallic compound layers and cracks were found in VFSLW. The cracks were closely related to the oxides on the interface. However, in MG-VFSLW, cross-riveting aluminum rivets and steel rivets were formed on the interface due to the micro-grooves and flashes made by the laser ablation. Good metallurgical bonding was also formed between AA5083 and SUS304. No remarkable intermetallic compound layers and cracks occurred. During the tensile shear tests, the aluminum rivets were cut off and some dimples and tear ridges existed on the fracture surface. In short, the high strength of the Al/steel lap joint in MG-VFSLW was attributed to the high-quality mechanical interlock and metallurgical bonding

Enhanced Catalytic Activity of Sub-nanometer Titania Clusters Confined inside Double-Wall Carbon Nanotubes

Sub-nanometer titania clusters have been homogeneously dispersed within double-wall carbon nantubes (DWNTs) with an inner diameter ranging from 1.0 to 1.5 nm. The confined titania exhibits a much higher activity than the titania particles attached on the outside walls of the DWNTs (the outside titania) in the epoxidation of propylene by H2O2. XPS, XANES and Raman spectroscopy data suggest electron transfer from titanium to the inner surfaces of the DWNTs. In contrast, no electron transfer has been observed for the outside titania. We also found that the extent of this confinement-induced electron transfer is temperature dependent. The enhanced activity of the confined titania clusters is likely attributed to their small sizes and the interaction with the DWNT surface. The synthesis method that we developed here can be readily applied to incorporation of other metal/metal oxide nanoparticles into carbon nanotubes

Genome-Wide Diversity Analysis of African Swine Fever Virus Based on a Curated Dataset

African swine fever (ASF) is a lethal contagious viral disease of domestic pigs and wild boars caused by the African swine fever virus (ASFV). The pandemic spread of ASF has had serious effects on the global pig industry. Virus genome sequencing and comparison play an important role in tracking the outbreaks of the disease and tracing the transmission of the virus. Although more than 140 ASFV genome sequences have been deposited in the public databases, the genome-wide diversity of ASFV remains unclear. Here we prepared a curated dataset of ASFV genome sequences by filtering genomes with sequencing errors as well as duplicated genomes. A total of 123 ASFV genome sequences were included in the dataset, representing 10 genotypes collected between 1949 and 2020. Phylogenetic analysis based on whole-genome sequences provided high-resolution topology in differentiating closely related ASFV isolates, and drew new clues in the classification of some ASFV isolates. Genome-wide diversity of ASFV genomes was explored by pairwise sequence similarity comparison and ORF distribution comparison. Tandem repeat sequences were found widely distributed and highly varied in ASFV genomes. Structural variation and highly variable poly G or poly C tracts also contributed to the genome diversity. This study expanded our knowledge on the patterns of genetic diversity and evolution of ASFV, and provided valuable information for diagnosis improvement and vaccine development

Self-Assembly of Atomically Thin and Unusual Face-Centered Cubic Re Nanowires within Carbon Nanotubes

Rhenium (Re), a high-performance engineering material with a hexagonal close-packed (hcp) structure, remains stable even under pressures of up to 250 GPa and at temperatures up to its melting point (3453 K). We observed here that Re atoms self-assembled, within the confined space of carbon nanotubes (CNTs) with a diameter of <1.5 nm, into ultrathin nanowires stacking with an unusual face-centered cubic (fcc) structure along the CNTs. In contrast, only Re nanoparticles of hcp structure formed on an open surface of graphite and carbon black. Aberration-corrected electron microscopy unambiguously showed the atomic arrangements of the Re nanowires and their confinement within the CNTs, ∼80% exhibiting a four-atom and 15% a nine-atom configuration. Density functional theory calculations confirmed that the formation of unusual fcc-stacking Re nanowires is largely facilitated by the strong interaction between Re atoms and CNTs and the spatial restriction within the CNTs. The use of CNTs as nanoscale reactors to create novel structures not only is fundamentally interesting but also may find unique applications in catalysis, sensing, and nanoelectronics

Coating Pt-Ni Octahedra with Ultrathin Pt Shells to Enhance the Durability without Compromising the Activity toward Oxygen Reduction

We describe a new strategy to enhance the catalytic durability of Pt-Ni octahedral nanocrystals in the oxygen reduction reaction (ORR) by conformally depositing an ultrathin Pt shell on the surface. The Pt-Ni octahedra were synthesized according to a protocol reported previously and then employed directly as seeds for the conformal deposition of ultrathin Pt shells by introducing a Pt precursor dropwise at 200 degrees C. The amount of Pt precursor was adjusted relative to the number of Pt-Ni octahedra involved to obtain [email protected] octahedra of 12nm in edge length for the systematic evaluation of their chemical stability and catalytic durability compared to Pt-Ni octahedra. Specifically, we compared the elemental compositions of the octahedra before and after treatment with acetic and sulfuric acids. We also examined their electrocatalytic stability toward the ORR through an accelerated durability test by using a rotating disk electrode method. Even after treatment with sulfuric acid for 24h, the [email protected] octahedra maintained their original Ni content, whereas 11% of the Ni was lost from the Pt-Ni octahedra. After 10000cycles of ORR, the mass activity of the Pt-Ni octahedra decreased by 75%, whereas the [email protected] octahedra only showed a 25% reduction