Cytoplasmic DNAs: Sources, sensing, and roles in the development of lung inflammatory diseases and cancer

Cytoplasmic DNA is emerging as a pivotal contributor to the pathogenesis of inflammatory diseases and cancer, such as COVID-19 and lung carcinoma. However, the complexity of various cytoplasmic DNA-related pathways and their crosstalk remains challenging to distinguish their specific roles in many distinct inflammatory diseases, especially for the underlying mechanisms. Here, we reviewed the latest findings on cytoplasmic DNA and its signaling pathways in inflammatory lung conditions and lung cancer progression. We found that sustained activation of cytoplasmic DNA sensing pathways contributes to the development of common lung diseases, which may result from external factors or mutations of key genes in the organism. We further discussed the interplays between cytoplasmic DNA and anti-inflammatory or anti-tumor effects for potential immunotherapy. In sum, this review aids in understanding the roles of cytoplasmic DNAs and exploring more therapeutic strategies

Facile in situ solution synthesis of SnSe/rGO nanocomposites with enhanced thermoelectric performance

Constructing nanostructured composite architectures has been considered as an effective strategy to reduce the lattice thermal conductivity (κL) and enhance the dimensionless figure of merit (ZT) of thermoelectric materials. Herein, a series of SnSe/reduced graphene oxide (rGO)-x (x = 0.1, 0.3, 0.5, 0.7 wt%) nanocomposites are controllably synthesised in situ via a facile single-step bottom-up solution method, where rGO nanosheets are incorporated intimately into the SnSe matrix. Nanocompositing performs two key functions: (i) significantly reducing the lattice thermal conductivity of the material, which can be attributed to enhanced phonon scattering from high-density SnSe/rGO interfaces, and (ii) improving the electrical conductivity over the low temperature range, as result of an increased carrier concentration. The subsequent thermoelectric performance of SnSe/rGO sintered pellets has been optimised by tuning the rGO mass fraction, with SnSe/rGO-0.3 achieving κL = 0.36 W m−1 K−1 at 773 K (cutting the κL of SnSe by 33%) to yield a maximum ZT of 0.91 at 823 K (representing a ∼47% increase compared to SnSe). This study provides a new pathway to improve the thermoelectric performance of polycrystalline SnSe by way of engineering metal chalcogenide/rGO composite architectures at the nanoscale

Exploration of the Product Specificity of chitosanase CsnMY002 and Mutants Using Molecular Dynamics Simulations

Chitosanase CsnMY002 is a new type of enzyme isolated from Bacillus subtilis that is used to prepare chitosan oligosaccharide. Although mutants G21R and G21K could increase Chitosan yield and thus increase the commercial value of the final product, the mechanism by which this happens is not known. Herein, we used molecular dynamics simulations to explore the conformational changes in CsnMY002 wild type and mutants when they bind substrates. The binding of substrate changed the conformation of protein, stretching and deforming the active and catalytic region. Additionally, the mutants caused different binding modes and catalysis, resulting in different degrees of polymerization of the final Chitooligosaccharide degradation product. Finally, Arg37, Ile145 ~ Gly148 and Trp204 are important catalytic residues of CsnMY002. Our study provides a basis for the engineering of chitosanases

A new species of the genus Hebius (Squamata: Colubridae: Natricinae) from Hunan Province, China

Zhou, Zhengyan, Sun, Zhiyong, Qi, Shuo, Lu, Yuyan, Lyu, Zhitong, Wang, Yingyong, Li, Pipeng, Ma, Jianzhang (2019): A new species of the genus Hebius (Squamata: Colubridae: Natricinae) from Hunan Province, China. Zootaxa 4674 (1): 68-82, DOI: https://doi.org/10.11646/zootaxa.4674.1.

Construction of a Full-Length Enriched cDNA Library and Preliminary Analysis of Expressed Sequence Tags from Bengal Tiger Panthera tigris tigris

In this study, a full-length enriched cDNA library was successfully constructed from Bengal tiger, Panthera tigris tigris, the most well-known wild Animal. Total RNA was extracted from cultured Bengal tiger fibroblasts in vitro. The titers of primary and amplified libraries were 1.28 × 106 pfu/mL and 1.56 × 109 pfu/mL respectively. The percentage of recombinants from unamplified library was 90.2% and average length of exogenous inserts was 0.98 kb. A total of 212 individual ESTs with sizes ranging from 356 to 1108 bps were then analyzed. The BLASTX score revealed that 48.1% of the sequences were classified as a strong match, 45.3% as nominal and 6.6% as a weak match. Among the ESTs with known putative function, 26.4% ESTs were found to be related to all kinds of metabolisms, 19.3% ESTs to information storage and processing, 11.3% ESTs to posttranslational modification, protein turnover, chaperones, 11.3% ESTs to transport, 9.9% ESTs to signal transducer/cell communication, 9.0% ESTs to structure protein, 3.8% ESTs to cell cycle, and only 6.6% ESTs classified as novel genes. By EST sequencing, a full-length gene coding ferritin was identified and characterized. The recombinant plasmid pET32a-TAT-Ferritin was constructed, coded for the TAT-Ferritin fusion protein with two 6× His-tags in N and C-terminal. After BCA assay, the concentration of soluble Trx-TAT-Ferritin recombinant protein was 2.32 ± 0.12 mg/mL. These results demonstrated that the reliability and representativeness of the cDNA library attained to the requirements of a standard cDNA library. This library provided a useful platform for the functional genome and transcriptome research of Bengal tigers

Construction and Analysis of Siberian Tiger Bacterial Artificial Chromosome Library with Approximately 6.5-Fold Genome Equivalent Coverage

Bacterial artificial chromosome (BAC) libraries are extremely valuable for the genome-wide genetic dissection of complex organisms. The Siberian tiger, one of the most well-known wild primitive carnivores in China, is an endangered animal. In order to promote research on its genome, a high-redundancy BAC library of the Siberian tiger was constructed and characterized. The library is divided into two sub-libraries prepared from blood cells and two sub-libraries prepared from fibroblasts. This BAC library contains 153,600 individually archived clones; for PCR-based screening of the library, BACs were placed into 40 superpools of 10 × 384-deep well microplates. The average insert size of BAC clones was estimated to be 116.5 kb, representing approximately 6.46 genome equivalents of the haploid genome and affording a 98.86% statistical probability of obtaining at least one clone containing a unique DNA sequence. Screening the library with 19 microsatellite markers and a SRY sequence revealed that each of these markers were present in the library; the average number of positive clones per marker was 6.74 (range 2 to 12), consistent with 6.46 coverage of the tiger genome. Additionally, we identified 72 microsatellite markers that could potentially be used as genetic markers. This BAC library will serve as a valuable resource for physical mapping, comparative genomic study and large-scale genome sequencing in the tiger

Programmable and Shape–Color Synchronous Dual-Response Wood with Thermal Stimulus

Stimuli-responsive materials exhibit huge potential in sensors, actuators, and electronics; however, their further development for reinforcement, visualization, and biomass-incorporation remains challenging. Herein, based on the impregnation of thermochromic microcapsule (TCM)-doped dynamic covalent vitrimers, a programmable shape-color dual-responsive wood (SRW-TC) was demonstrated with robust anisotropic structures and exchangeable covalent adaptable networks. Under mild conditions, the resultant SRW-TC displays feasible shape memorability and programmability, resulting from the rigidity–flexibility shift induced by the glass-transition temperature (34.99 °C) and transesterification reaction triggered by the topology freezing transition temperature (149.62 °C). Furthermore, the obtained SRW-TC possesses satisfactory mechanical performance (tensile strength of 45.70 MPa), thermal insulation (thermal conductivity of 0.27 W/m K), anisotropic light management, and benign optical properties (transmittance of 51.73% and haze of 99.67% at 800 nm). Importantly, the incorporation of compatible TCM enables SRW-TC to visualize shape memory feasibility and rigidity/flexibility switching and respond to the external thermal stimulus through the thermal-induced shape–color synchronous dual-responsiveness, which successfully demonstrates the applications of sensing temperature, grasping objects, encrypting/decoding icon messages, and so on. The proposed facile and highly effective strategy could serve as a guideline for developing high-performance multifunctional wood composite with promising intelligent applications in performance visualization, environmental sensing, materials interactivity, information dual-encryption, local precision shape and color regulation, etc

Programmable and Shape–Color Synchronous Dual-Response Wood with Thermal Stimulus

Stimuli-responsive materials exhibit huge potential in sensors, actuators, and electronics; however, their further development for reinforcement, visualization, and biomass-incorporation remains challenging. Herein, based on the impregnation of thermochromic microcapsule (TCM)-doped dynamic covalent vitrimers, a programmable shape-color dual-responsive wood (SRW-TC) was demonstrated with robust anisotropic structures and exchangeable covalent adaptable networks. Under mild conditions, the resultant SRW-TC displays feasible shape memorability and programmability, resulting from the rigidity–flexibility shift induced by the glass-transition temperature (34.99 °C) and transesterification reaction triggered by the topology freezing transition temperature (149.62 °C). Furthermore, the obtained SRW-TC possesses satisfactory mechanical performance (tensile strength of 45.70 MPa), thermal insulation (thermal conductivity of 0.27 W/m K), anisotropic light management, and benign optical properties (transmittance of 51.73% and haze of 99.67% at 800 nm). Importantly, the incorporation of compatible TCM enables SRW-TC to visualize shape memory feasibility and rigidity/flexibility switching and respond to the external thermal stimulus through the thermal-induced shape–color synchronous dual-responsiveness, which successfully demonstrates the applications of sensing temperature, grasping objects, encrypting/decoding icon messages, and so on. The proposed facile and highly effective strategy could serve as a guideline for developing high-performance multifunctional wood composite with promising intelligent applications in performance visualization, environmental sensing, materials interactivity, information dual-encryption, local precision shape and color regulation, etc