Semantic Part Segmentation using Compositional Model combining Shape and Appearance

In this paper, we study the problem of semantic part segmentation for animals. This is more challenging than standard object detection, object segmentation and pose estimation tasks because semantic parts of animals often have similar appearance and highly varying shapes. To tackle these challenges, we build a mixture of compositional models to represent the object boundary and the boundaries of semantic parts. And we incorporate edge, appearance, and semantic part cues into the compositional model. Given part-level segmentation annotation, we develop a novel algorithm to learn a mixture of compositional models under various poses and viewpoints for certain animal classes. Furthermore, a linear complexity algorithm is offered for efficient inference of the compositional model using dynamic programming. We evaluate our method for horse and cow using a newly annotated dataset on Pascal VOC 2010 which has pixelwise part labels. Experimental results demonstrate the effectiveness of our method

Edge-as-a-Service: Towards Distributed Cloud Architectures

We present an Edge-as-a-Service (EaaS) platform for realising distributed cloud architectures and integrating the edge of the network in the computing ecosystem. The EaaS platform is underpinned by (i) a lightweight discovery protocol that identifies edge nodes and make them publicly accessible in a computing environment, and (ii) a scalable resource provisioning mechanism for offloading workloads from the cloud on to the edge for servicing multiple user requests. We validate the feasibility of EaaS on an online game use-case to highlight the improvement in the QoS of the application hosted on our cloud-edge platform. On this platform we demonstrate (i) low overheads of less than 6%, (ii) reduced data traffic to the cloud by up to 95% and (iii) minimised application latency between 40%-60%.Comment: 10 pages; presented at the EdgeComp Symposium 2017; will appear in Proceedings of the International Conference on Parallel Computing, 201

FreePSI: an alignment-free approach to estimating exon-inclusion ratios without a reference transcriptome.

Alternative splicing plays an important role in many cellular processes of eukaryotic organisms. The exon-inclusion ratio, also known as percent spliced in, is often regarded as one of the most effective measures of alternative splicing events. The existing methods for estimating exon-inclusion ratios at the genome scale all require the existence of a reference transcriptome. In this paper, we propose an alignment-free method, FreePSI, to perform genome-wide estimation of exon-inclusion ratios from RNA-Seq data without relying on the guidance of a reference transcriptome. It uses a novel probabilistic generative model based on k-mer profiles to quantify the exon-inclusion ratios at the genome scale and an efficient expectation-maximization algorithm based on a divide-and-conquer strategy and ultrafast conjugate gradient projection descent method to solve the model. We compare FreePSI with the existing methods on simulated and real RNA-seq data in terms of both accuracy and efficiency and show that it is able to achieve very good performance even though a reference transcriptome is not provided. Our results suggest that FreePSI may have important applications in performing alternative splicing analysis for organisms that do not have quality reference transcriptomes. FreePSI is implemented in C++ and freely available to the public on GitHub