21 research outputs found

    Phylogenetic relationships among macaques based on <i>Alu</i> elements.

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    <p>(A) PCR amplification analysis of <i>Alu</i> insertion polymorphisms in <i>Macaca</i>. The locus <i>Alu</i> 10 is an <i>Alu</i> insertion specific to the <i>sinica</i> group. The locus <i>Alu</i> 27 is an <i>Alu</i> insertion shared by the <i>sinica</i> and the <i>arctoides</i> groups. The locus yb1-mb-53 is an <i>Alu</i> insertion shared by the <i>fascicularis</i> and the <i>mulatta</i> groups. The locus MS-b1-174 is an <i>Alu</i> insertion clustering the <i>sinica/arctoides</i> and the <i>fascicularis/mulatta</i> lineages. (B) Macaque phylogenetic tree derived from 84 <i>Alu</i> insertion loci polymorphisms. The amplification patterns of the <i>Alu</i> insertions were used to construct a Dollo parsimony tree of macaque phylogenetic relationships using <i>P</i>. <i>hamadryas</i> as outgroup in PAUP*4.0b10. The numbers above the branches indicate the percentage of bootstrap replicates (1000 iterations) producing trees including that node. The numbers below the branches indicate the number of unambiguous insertions supporting each node.</p

    Distribution maps of <i>M</i>. <i>mulatta</i> and <i>M</i>. <i>arctoides</i>.

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    <p>A refers to <i>M</i>. <i>mulatta</i>, and B represents <i>M</i>. <i>arctoides</i>. Distribution contours of individual species are according to Corbet and Hill [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0154665#pone.0154665.ref074" target="_blank">74</a>].</p

    Molecular phylogenetic tree derived from nuclear data using Bayesian, MP and ML analysis.

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    <p>The numbers are Bayesian posterior probabilities (BPP) and bootstrap support (BSP). The A-G besides the nodes refers to divergence times shown as in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0154665#pone.0154665.t002" target="_blank">Table 2</a>.</p
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